Gene detail

Detailed information of OS493_024539-T1 in Lophelia pertusa

Genomic Location: scaffold_115:144003...146864
NR annotation: KAJ7390507.1, negative regulation of DNA damage response, signal transduction by p53 class mediator [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001276 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_024539-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR052304 all species →	Family	Pituitary tumor-transforming gene 1 protein-interacting	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15191 all species →	PROTEIN CBG20567	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26099	PTTG1IP; PTTG1-interacting protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024539-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

65.4Max TPM

21.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.98	28.75
polyp at pH7 6	18	17	15.50	24.61
coral polyp · control treatment	16	16	26.59	65.03
coral polyp · oil and dispersant treatment	16	16	25.64	45.07
coral polyp · oil treatment	16	16	20.23	30.56
coral polyp · dispersant treatment	16	16	28.52	65.36
Polyp	10	10	11.81	19.60

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.75
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.17
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.34
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.22
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.72
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.52
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.21
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.13
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.45
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.97
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.17
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.43
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.88
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.57
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.77
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.21
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.10
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.37
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.25
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.24
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.60
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.86
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.32
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.87
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.03
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.80
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.66
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.84
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.07
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.03
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.66
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.05
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.88
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.34
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.02
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.86
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.82
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.99
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.78
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.71
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.20
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.03
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.55
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.93
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.16
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.46
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.91
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.56
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.69
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.36
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.96
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.81
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.30
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.20
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.78
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.74
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.80
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.24
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.26
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.60
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.34
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.17
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.44
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.46
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.31
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.69
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.28
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.94
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.66
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.53
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.69
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.14
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.60
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.30
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.57
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.69
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.12
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.26
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.33
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.25

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.