Detailed information of OS493_024562-T1 in Lophelia pertusa

Genomic Location: scaffold_115:376656...386294
NR annotation: KAJ7390527.1, hypothetical protein OS493_024562 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BYH3tRNA:m(4)X modification enzyme TRM13 homolog OS=Mus musculus OX=10090 GN=Trmt13 PE=2 SV=1
Q9NUP7tRNA:m(4)X modification enzyme TRM13 homolog OS=Homo sapiens OX=9606 GN=TRMT13 PE=1 SV=2
Q54BD5tRNA:m(4)X modification enzyme TRM13 homolog OS=Dictyostelium discoideum OX=44689 GN=trm13 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004197 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05206
all species →		TRM13Methyltransferase TRM13FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039044
all species →		FamilytRNA:m(4)X modification enzyme Trm13Interproscan
IPR007871
all species →		DomainMethyltransferase TRM13Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12998
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008175
all species →		Molecular FunctiontRNA methyltransferase activityInterproscan
GO:0030488
all species →		Biological ProcesstRNA methylationInterproscan
GO:0106050
all species →		Molecular FunctiontRNA 2'-O-methyltransferase activityInterproscan
GO:0008033
all species →		Biological ProcesstRNA processingInterproscan
GO:0008168
all species →		Molecular Functionmethyltransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_024562-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_024562-T1 global co-expression network
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