Gene detail

Detailed information of OS493_024584-T1 in Lophelia pertusa

Genomic Location: scaffold_115:804814...840484
NR annotation: KAJ7390547.1, maintenance of organ identity [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_024584-T1

ATGGATAATGCTGGACAGACGTATATAAGCTCTCAGGTTTACAAATTGCAAGGTGGCACATTTGTTGCCCAAAACGTTAACCTTGACAACACCCGCAGTGCTTCTGGTCTGGCTGTCTTTGAAAACGCTGGAACGCTGAAGCTCGCCATAGCTTTCTTCAATGACAGTGCAAGTTCGCAGAGTTTCCAAACAAAATCACCCATTTATGAGTGGAGAACAAGCTCAAACTCGTTCATCTTGCTGCAAGAAGTCGACACAGATGGTCCAGTCGGAGTGGAGTATTTTGAACACAAAGGAGGACAGTACTTGGTGTTTGCTAATTCCAAGTCTTCTGTGGAGATATACCGTTGGAATGGAAACAGGTTCAACAGTGTGCAGGTCCTTCCAACCTCATATGTTCAGTCAGCCAAACCATATGTTGCTCAAGGCAATGCATATCTTGTAACAGTTGAGAAGGGTGGTCATTTGAATGTTTACGTATGGGATGATGTGTCAAAGTTCACTCTGCAAATGAATACAACCCTTGAAAATGCCCAGAGTGCCAGTCCTGTTGTTATCAACGATCCAGTGGCCGGTGAAATGACTGGGTTTGCTGTGGCAATGTCTGGGAAAGGACTCTCGCCCATTCTCCACCCGGTCAATCTGTCATCACAAGCTGACTTCATCCCCAGGCAAGGACAACTCATCTTTGAAAATGGACAAAAGGAGCTTGAACTTGATTTTACCATTCTACCTGACACCATCCCTGAGAGGGATGAAGCGTTTACCGTACGCATTTTCAACGCCTCAGGAAAAGCCATTGTTAGCAGTCAAAAACAAGAACTGACCATCAACATTCTGTCCAATGATGATGCATATGGCAGAATAGGCTTTGCATCAAGCTCCCTACTGAAAGTACACCCAGAAACAGCAGATGATTCCGTGGTGACATTTGAGGTGATAAGGGAGTATGGCAGTCTTGGTCGCGTGGTGGCCCAGTGGAATGTCTCCGGGAATTTCAGTGATGGAGATCTGAGTCCTTTGTCTGGAGAGCTTGTGTTTGAAGATGGACAGACCAGTCGAAATATATCAATAACTGTTCACAAGGATATGGTCCCTGAGCTTGTTGAAGTTGCATATGTCAGGCTTCAAAGCCTCACACAAACTGGGTCATCAGATGTGAACCGTGGTGCAGTACTGAACACTGCACGAGTCACAGCCATGTTGATAATCCCAGCTAATGATGATCCACATGGAATGATCAGCTGGAAGAACACACTCGTCATATCTCAAGAGGATGGTCCCAAGAACACTACCCTATCTGTGCACATCATGCGGCGGTATGGTCTCATAGGAGACATTGTGGTGTCTTACGAAACAGTTCAACTATTGAGTGTAACTCATGGTGATGATCGAGTGGGTTTGCCTGGAGTTGATTACAAAGCTGTGAGAAGTACTGTAGAAATTCCAGCAGGACAGAACTCTACACAGATAACCTTGGATGTAGCACATTACGACAGCACAGTAATAAAGACAATTTTCCAAGTGAATCTTACGGCTGTAACACTCAAGCAAGGTGTCTTGATCATAAACTCGCCTCGCATCGATCCAAACTCTCGCTTGTTGGAAGTCGTGATTGCACAACCAAATCTAACCACAGGCGAACTTAACTTCGACGTCAGTGCTTTACTAGACCCTGAAACTCGTACCATCCAGATAGAAGAATACGTGGGAAGGCTTAACATCACAGTGCAGCGAACCAATGGTGTGTCAGGTGATGTAGGCTTCCGCATCAACATCACCAATGACGATGTATCTGAAATTGAAGAAGGTTTCTACATTCAAATGAGTCGTCCCTTAGGAGGTGTTTTGATTGGTCCAGAGAGCAAAGTGGATGTGATTATCAAGCCCAACGATGACCCATATGGACGTTTTGGCTTTACAAAGGCAATATCCGAGGGTATCAACGTGGTGCAAGAAGGGGCCACATTGCAGCTTGCAGTGAAGAGAGAACGGGGTACCTTTAGAGACGTGCATGTTAGCTGGAGGCTGACACCTAGTGGTGGCATTGTAAATGCTAGCTCTCAAATCTATCCAATGAATGGCTCACTTACTTTTAAACAGGGAGTCACCTCACAGTTTATCACGCTCCATGCACTCGATGACTCGGTAGCGGAAGAAGGTCAAACGTTTACCTGTGAACTTGTCAGTGTCAACAGTGGCGGGAAACTCGACCCAGCGCTCGTTCAAGCCACAGTTCACATCCCAGCCAATGACAAAGTGGAAGGAGTTGTGTCAATTGATCCGTCAACAAGAGATATCATAGCAGGGGAACCGGTGCAGGGGCACGATGGAGTGTTTGTTATACGGTTACTCCGTCGGGTAGGTCAGTCTGGTAATGCTCAGGTCACGTGGGCAATCACTATAAAGTCACCTGGTGATGCACCAAGTCTTGTTAATACTTTCAATGCTAGTTCTGGTTCAGTTGATATGCCAGATGGTGTGGATACGGTGATGCTTCCTATTAAGGTGAAAGATGATGTCACAGCAGAAGAGTTGGCTGAGTATACATTCGCTCTGACTGGGTCCACCCTGACGACTCTTGATCCTGCACAGAGTGCGCGCAGAGCACAAATCACTGTCGTAGCTAGTGACGATCCATATGGAATTATCGAGTTTCAGTCGGCATCAATGCAAAATGTCAGCGAAGATGTTGGGTTTGTGAATCTCACTGTTGTTAGGAATGGTGGAAGCATCGGTGAACTGTTGGTTAACTACAGTGTCTCTTCGACCACTGCCATAAAGGGAGCTGACTACGAGTCGTTTGGAAGTGTTCTTAATTTCGCTGATAAAGAAGATCAAAAAGCCATTCACAACTACAGCATTGTAGGTGGCTTACCGCTGAATATGCGACCCAAGATCAATCCAGTCAAGAACAAGGTTATGATTAATATTGACGAGAATGATGACGCTCGTGGAATTATACGCTTTACACAGAGCACCAAACTGATACGAGAGGAGAGTGGGGCTGCTGTGCTGCAACTTGTTAGAGAAGGGGGTAGCCTTGGAGCTGTTGACGTCATATTTTCAGTCCTGAATGGAACCGCTATTCTTGGTGAAGATTTCAGCGAGTCCAGAGGGACCGTTCGTTTCTCCAACGGTCAAACGTCTTCATTCATAAACATAACAATCATTGATGACAATGTTCCAGAACAACGTGACTACTTTACAGTCACTCTAGATTCCGTGACAGGAGGAGCCAAGTTAGCATCGCCAACTACCGTGACTGTTACCATAGAAACAAGTGACGACCCCGGTGGATTGTTTGGATTTGTGAATGGTTCTCAGCTGTCACTTGTTAATCCCAGCAAGTCCACAGATCTTCGCTTTGTTATTCAACGAGAAGGAGGAGCTGAGGGAGAGGTCGAGGTGAGTTGGAAGTTAATTCGAGTCCACCCTCCATGTGATTCTTGTACATTACCTGATGACTTTGAGGGGCCCACCGATGGATCAAGTGTATTTCCTGACAGGGGCATAGGAGCTACAAGGACAGTAAAACTTCGTGTTAAACCTTTCTTGGGTTTTGACGAACCTGAGGAGCGATTCGTTTTAACCATTTACAAAGCTTCTGGTAATGGTTCAATCGATGGTCTTAGCTCCAACATCACCATAACTATTGCCAAACACGGCTTTCCTAATGGAGTGTTCAAGTTTCAGAGTACAGCTACCAAAACGTTTGATGAACCAGCAAGTGGAGTGGATTCACAGGCGTTTACAGTGCGGAGGACGAATGGCACTCAAGGAACAGTTAATGTTAAGTGGGAAATAACCAGTCCAGCGGGTTCTTTGGGGTCTCGTGGCCTAACAAGTACGTCCGGTACAGTGACTTTCGCTCCTCGTGAATTCCTGAAGAACATTTTGGTGGAAATCAAAGCAGATGATGTTCCTGAACTGGAAGTTGTTTACAAGTTGCAGATTGTGTCCGTGGATGGAGGAGCGGATTTAGATCGTTCTGCCAGTAATGTCACATTCAAAATAAGGGCAAACGATGATCCTCATGGAGTTTTCAAGCTTCAACAAGGTGCACAAAAAATTCGAGTCACTGGAAACAGCCGAGAGTTTCAGTTTACTGTCGTGCGCGAGAAAGGAACATTCGGTGCAGTTGATGTGCAGTATGAGGTGCAACACTCCGTTTGGTATCCCCAGGAAATGAAAGGAAGTGTCACAGTCCCTGATAAGCAAAGCCAGGCTTCTACGAGCATCGCTTTGACAGCCTTCCTACGACTGGGCTCCAAATTCACTATTACATTGACGGGTGTTCGTTATAGTGATAGTCAAGTTCCAGCTACCTCTATCGCACCAAAGTTATCAAGTAGTTCTCCAAGTGACACTAGTGAGAGTGTTGATGTATCAGAGGATGCTGCCAATGCTGTGTTTACGTTTGCTAGTGAATCTTTGAGGCTGGCAGTGGACTTTGACAACACAGTTCCGTCCATCACCGTCATTCGTGAAGGTTTATTTGGCAGCACTACAGTGAACATCAGGTCTGGGTCTCCACCAGGAACCTTTGATGGCTTTGCTGCGGGAAAAGTACTTCCGGATACCAAGTTGTTGTCATTTACTGGGTCCAAAATAAACGATTCATTTTCCGTTCAGGTACAGCCAATGCTCGTTCCAGACAAAAAGCTCGTGTACTCTCTGTACTTGGCCTCGGCACACACGCCAGGTGATCTTCCAGGTGGCGCGAACGTCACTAGCGGAGCCAGTCGAACAGTGGTTATTGAGTACAGCGGTGTTGTAGTGGTTGCTCCAGATACACAACAGCTTGTAGCTATTGAGGATGGAACGGTTAAGTGCAAGGTCGTTCGTCAGTTCAGTGTGTTAGGTTCTGTTACAGTGCATTACTCCTTCCTCGGCTCACCGGACAGTGTCAACATGGCAGATGGAGAGTTCAGCAAAGAGTTTGATGTTAAAGTGGACGGCAACTCTAATCCGCAGAAAGATCGCGTGCTCTTCCTGAACTTAACCTCTGTCACTGGAACTGGTTCTCCACGTCTGGGCTTGAACAAGACTGCACGCATAACAATCAAAGACAACGACGATCCCCAGGGAGTGTTAAGCTTCCGTAATACTCGTATAACAGTGCCAGAAAATGCGACGAGCGGGAAATCCCGCATGGTGGAGCTTGATATTCAACGTACCAAGGGCACCTTTGGTGATGTGTCTGTTCTTGTTAGGACTGTGGGGGGAGGGGAGCGTTGGAGTCCTATACTGCAGTCCTTGAAAGTAGCCATTGCGGGGAAGAGTGGAGAAAAGAATGCCACTGTTGGCTTTGATTACGTTGAACTCTCAAGGAGAGTGAATTTCCCGGCCCAAGAGCCGATACCAGTCAATGGACAAGTGAGAAAGGTTCAGCTGGAGATCAAGGATGATGAACTGCCTGAACCTGATGAACAGGTTTTAGTTTACTTGACAGATGCCACAGGTGGCGCCAGAATTGCCACTGATTCCGATACCGGACTCCAGTCTTGGGCCACTGTCACCATCCAAGGAAATGATTTGATGAACGGTGAAATAGGCTTCGTCCCAGGATCACAGACTGCAACAATTGATGAAGATGGTTCCAGGAAAGCTGTACTCGAAGTTCAACGAACAAAAGCTACTTTTGGTGAAGTTCAGGCTCCTATTGTGGTTGGGGATGACTGCCCTCCTGGTTGTCTACCGGATAGTGTAGTGGTGTCGTGGAGCGTTCGTGAAAGCGCGTTTCGTGGTGAAGTTGAAGCTGCTGAAGGAAGAATCACATTTGCCAGTGGCGTGCGGCAAAGAGATCTTGAGATCCGTTTGAAGAACGATGAGAAACCTGAACGAGCTGGCACGTTTCACGTGGATTTAACCGAAATTGTTAGTGGCAACCAGGCACTCATAAATTCTCAATTCCGGTCGGCGACTATCAATGTTCTGAAAAGTGATTATCCCGATGGAACCATCGCCTTCTCCCAGGATGCCACCTACACCGACAAGACATCTACTGAAGTCCGACTTAAGGTCATCCGGGAGTATGGAAAAGACAATGACGTCACAGTTTACTATAAGGCACGTGATCTAACTGAGAGGTTCACCACAAAACCAGGCCTGCAAACTTCCCAGGCATTTGCGGGAGAAGATTACGAAAAGCCAACTGCTGTTTCTGTTAGATTTGCTAAAGGAGAATCTTCGCAGTTCATCACCATTACACTAACTCCCAGAGAAGCGTCCTCCACCAAGTACCCAAAAGCCTTTGAGGTCGTTTTGCTCAATGCTACTGCAGGGGCACAGATCAAGGGATACAACACTTCATTGGTTACCATTTCAGATGACAAAGAAACCACAAATTTCCTCAGATTACGAGCGTCGGCATTCCAAACTCCACTGTCTGATGCGGATATCAACAAGATTCTGTCCGATCTACAATCTAGCATTAAGACGCCGCTGGATGAAGATCGATTGAAACTAACAATCGACACGATTGATCACATTTTGAAATACAAGAAGTCTCTTCCAAATCTACAGAACAGAACGTTGCAAGATACGTCCAAGCAAACACTGATGAACATCTTTGATGAGTTGTTGAATCCCAGCAGAGACGACACCAGGGGTCAAGACGAACTCTCCAACGTATTCACGACGTTTGCATTTTCTCTGCTGTATGGTCTGCCATGTGAGGGAGAACAGGCTTCTTATCAGTCATTACAAGGAATACGTGCAACAGTGAAAGGCTTTAGACGAACGCCTGTTCAACTCAACGAACTGCAAATCAAATCTGCAGGAGGGAAGGATTACTTCCAGTATCCATCCAATTTTTATTCAACTTCTTCATCAAGCGCAGAGTGTCGCGATGTTCACTTCATTGATTATCAGACTGCTCACTGGTTCAACAAACCTGGCCAGCCTCCTGTTATAAATGAAAAGGTGCTCTCCACCTCGCCATCTGACTCCTCGTCAACCATCAGCAGTGAAAATCCTGTTACATATCGTATCTACAGTGACAAAAAACGAGTCACTCCTAAGGGAGCCGACTGTGTCTACTGGATACTTCTGCGTCAGCTTGGTCCAAAAAAGGCTGCACTAAAAAGAGCGATAAAGATGATTATGTAG

Transcript

OS493_024584-T1

Protein

OS493_024584-T1

MDNAGQTYISSQVYKLQGGTFVAQNVNLDNTRSASGLAVFENAGTLKLAIAFFNDSASSQSFQTKSPIYEWRTSSNSFILLQEVDTDGPVGVEYFEHKGGQYLVFANSKSSVEIYRWNGNRFNSVQVLPTSYVQSAKPYVAQGNAYLVTVEKGGHLNVYVWDDVSKFTLQMNTTLENAQSASPVVINDPVAGEMTGFAVAMSGKGLSPILHPVNLSSQADFIPRQGQLIFENGQKELELDFTILPDTIPERDEAFTVRIFNASGKAIVSSQKQELTINILSNDDAYGRIGFASSSLLKVHPETADDSVVTFEVIREYGSLGRVVAQWNVSGNFSDGDLSPLSGELVFEDGQTSRNISITVHKDMVPELVEVAYVRLQSLTQTGSSDVNRGAVLNTARVTAMLIIPANDDPHGMISWKNTLVISQEDGPKNTTLSVHIMRRYGLIGDIVVSYETVQLLSVTHGDDRVGLPGVDYKAVRSTVEIPAGQNSTQITLDVAHYDSTVIKTIFQVNLTAVTLKQGVLIINSPRIDPNSRLLEVVIAQPNLTTGELNFDVSALLDPETRTIQIEEYVGRLNITVQRTNGVSGDVGFRINITNDDVSEIEEGFYIQMSRPLGGVLIGPESKVDVIIKPNDDPYGRFGFTKAISEGINVVQEGATLQLAVKRERGTFRDVHVSWRLTPSGGIVNASSQIYPMNGSLTFKQGVTSQFITLHALDDSVAEEGQTFTCELVSVNSGGKLDPALVQATVHIPANDKVEGVVSIDPSTRDIIAGEPVQGHDGVFVIRLLRRVGQSGNAQVTWAITIKSPGDAPSLVNTFNASSGSVDMPDGVDTVMLPIKVKDDVTAEELAEYTFALTGSTLTTLDPAQSARRAQITVVASDDPYGIIEFQSASMQNVSEDVGFVNLTVVRNGGSIGELLVNYSVSSTTAIKGADYESFGSVLNFADKEDQKAIHNYSIVGGLPLNMRPKINPVKNKVMINIDENDDARGIIRFTQSTKLIREESGAAVLQLVREGGSLGAVDVIFSVLNGTAILGEDFSESRGTVRFSNGQTSSFINITIIDDNVPEQRDYFTVTLDSVTGGAKLASPTTVTVTIETSDDPGGLFGFVNGSQLSLVNPSKSTDLRFVIQREGGAEGEVEVSWKLIRVHPPCDSCTLPDDFEGPTDGSSVFPDRGIGATRTVKLRVKPFLGFDEPEERFVLTIYKASGNGSIDGLSSNITITIAKHGFPNGVFKFQSTATKTFDEPASGVDSQAFTVRRTNGTQGTVNVKWEITSPAGSLGSRGLTSTSGTVTFAPREFLKNILVEIKADDVPELEVVYKLQIVSVDGGADLDRSASNVTFKIRANDDPHGVFKLQQGAQKIRVTGNSREFQFTVVREKGTFGAVDVQYEVQHSVWYPQEMKGSVTVPDKQSQASTSIALTAFLRLGSKFTITLTGVRYSDSQVPATSIAPKLSSSSPSDTSESVDVSEDAANAVFTFASESLRLAVDFDNTVPSITVIREGLFGSTTVNIRSGSPPGTFDGFAAGKVLPDTKLLSFTGSKINDSFSVQVQPMLVPDKKLVYSLYLASAHTPGDLPGGANVTSGASRTVVIEYSGVVVVAPDTQQLVAIEDGTVKCKVVRQFSVLGSVTVHYSFLGSPDSVNMADGEFSKEFDVKVDGNSNPQKDRVLFLNLTSVTGTGSPRLGLNKTARITIKDNDDPQGVLSFRNTRITVPENATSGKSRMVELDIQRTKGTFGDVSVLVRTVGGGERWSPILQSLKVAIAGKSGEKNATVGFDYVELSRRVNFPAQEPIPVNGQVRKVQLEIKDDELPEPDEQVLVYLTDATGGARIATDSDTGLQSWATVTIQGNDLMNGEIGFVPGSQTATIDEDGSRKAVLEVQRTKATFGEVQAPIVVGDDCPPGCLPDSVVVSWSVRESAFRGEVEAAEGRITFASGVRQRDLEIRLKNDEKPERAGTFHVDLTEIVSGNQALINSQFRSATINVLKSDYPDGTIAFSQDATYTDKTSTEVRLKVIREYGKDNDVTVYYKARDLTERFTTKPGLQTSQAFAGEDYEKPTAVSVRFAKGESSQFITITLTPREASSTKYPKAFEVVLLNATAGAQIKGYNTSLVTISDDKETTNFLRLRASAFQTPLSDADINKILSDLQSSIKTPLDEDRLKLTIDTIDHILKYKKSLPNLQNRTLQDTSKQTLMNIFDELLNPSRDDTRGQDELSNVFTTFAFSLLYGLPCEGEQASYQSLQGIRATVKGFRRTPVQLNELQIKSAGGKDYFQYPSNFYSTSSSSAECRDVHFIDYQTAHWFNKPGQPPVINEKVLSTSPSDSSSTISSENPVTYRIYSDKKRVTPKGADCVYWILLRQLGPKKAALKRAIKMIM

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6JAN0	Adhesion G-protein coupled receptor V1 OS=Danio rerio OX=7955 GN=adgrv1 PE=2 SV=1
Q8WXG9	Adhesion G-protein coupled receptor V1 OS=Homo sapiens OX=9606 GN=ADGRV1 PE=1 SV=2
Q8VHN7	Adhesion G-protein coupled receptor V1 OS=Mus musculus OX=10090 GN=Adgrv1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001844 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03160 all species →	Calx-beta	Calx-beta domain	Domain	Interproscan
PF03736 all species →	EPTP	EPTP domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038081 all species →	Homologous_superfamily	CalX-like domain superfamily	Interproscan
IPR009039 all species →	Repeat	EAR	Interproscan
IPR003644 all species →	Domain	Na-Ca exchanger/integrin-beta4	Interproscan
IPR005492 all species →	Repeat	Leucine-rich glioma-inactivated , EPTP repeat	Interproscan
IPR026919 all species →	Family	Adhesion G-protein coupled receptor V1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46682 all species →	ADHESION G-PROTEIN COUPLED RECEPTOR V1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007154 all species →	Biological Process	cell communication	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0001965 all species →	Molecular Function	G-protein alpha-subunit binding	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007194 all species →	Biological Process	negative regulation of adenylate cyclase activity	Interproscan
GO:0010855 all species →	Molecular Function	adenylate cyclase inhibitor activity	Interproscan
GO:0071277 all species →	Biological Process	cellular response to calcium ion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_024584-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_024584-T1 global co-expression network