Detailed information of OS493_024620-T1 in Lophelia pertusa

Genomic Location: scaffold_116:227408...231834
NR annotation: KAJ7383935.1, Endoribonuclease Dicer [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6TV19Endoribonuclease Dicer OS=Danio rerio OX=7955 GN=dicer1 PE=2 SV=2
A0MQH0Endoribonuclease Dicer OS=Cricetulus griseus OX=10029 GN=DICER1 PE=2 SV=3
B3DLA6Endoribonuclease Dicer OS=Xenopus tropicalis OX=8364 GN=dicer1 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001530 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20930
all species →		Dicer_PBDDicer, partner-binding domainDomainInterproscan
PF04851
all species →		ResIIIType III restriction enzyme, res subunitFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR051363
all species →		FamilyRIG-I-like Receptor (RLR) HelicaseInterproscan
IPR048513
all species →		DomainDicer, partner-binding domainInterproscan
IPR014001
all species →		DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR006935
all species →		DomainHelicase/UvrB, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14074
all species →		HELICASE WITH DEATH DOMAIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0016787
all species →		Molecular Functionhydrolase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_024620-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_024620-T1 global co-expression network
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