Detailed information of OS493_024628-T1 in Lophelia pertusa

Genomic Location: scaffold_116:288208...290806
NR annotation: KAJ7383943.1, hypothetical protein OS493_024628 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B3DLA6Endoribonuclease Dicer OS=Xenopus tropicalis OX=8364 GN=dicer1 PE=2 SV=2
Q25BN1Endoribonuclease Dicer OS=Gallus gallus OX=9031 GN=DICER1 PE=2 SV=3
Q6TV19Endoribonuclease Dicer OS=Danio rerio OX=7955 GN=dicer1 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001530 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20932
all species →		Dicer_dsRBDDicer, dsRNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR044441
all species →		DomainDicer, double-stranded RNA-binding domainInterproscan
IPR036389
all species →		Homologous_superfamilyRibonuclease III, endonuclease domain superfamilyInterproscan
IPR000999
all species →		DomainRibonuclease III domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14950
all species →		DICER-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0030422
all species →		Biological ProcesssiRNA processingInterproscan
GO:0031054
all species →		Biological Processpre-miRNA processingInterproscan
GO:0004525
all species →		Molecular Functionribonuclease III activityInterproscan
GO:0006396
all species →		Biological ProcessRNA processingInterproscan
GO:0004530
all species →		Molecular Functiondeoxyribonuclease I activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006309
all species →		Biological Processapoptotic DNA fragmentationInterproscan
GO:0016442
all species →		Cellular ComponentRISC complexInterproscan
GO:0090501
all species →		Biological Processobsolete RNA phosphodiester bond hydrolysisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_024628-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_024628-T1 global co-expression network
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