Gene detail

Detailed information of OS493_024699-T1 in Lophelia pertusa

Genomic Location: scaffold_117:28887...29696
NR annotation: KAJ7378037.1, hypothetical protein OS493_024699 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9TR36	Phosphatidylinositol transfer protein beta isoform OS=Bos taurus OX=9913 GN=PITPNB PE=1 SV=3
P48739	Phosphatidylinositol transfer protein beta isoform OS=Homo sapiens OX=9606 GN=PITPNB PE=1 SV=2
Q5R6F0	Phosphatidylinositol transfer protein beta isoform OS=Pongo abelii OX=9601 GN=PITPNB PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004937 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02121 all species →	IP_trans	Phosphatidylinositol transfer protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001666 all species →	Family	Phosphatidylinositol transfer protein	Interproscan
IPR023393 all species →	Homologous_superfamily	START-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10658 all species →	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005548 all species →	Molecular Function	phospholipid transporter activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008525 all species →	Molecular Function	phosphatidylcholine transporter activity	Interproscan
GO:0008526 all species →	Molecular Function	phosphatidylinositol transfer activity	Interproscan
GO:0015914 all species →	Biological Process	phospholipid transport	Interproscan
GO:0031210 all species →	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_024699-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024699-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

149.2Max TPM

57.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	36.21	56.76
polyp at pH7 6	18	18	37.84	53.14
coral polyp · control treatment	16	16	71.67	114.85
coral polyp · oil and dispersant treatment	16	16	90.03	149.18
coral polyp · oil treatment	16	16	54.37	104.10
coral polyp · dispersant treatment	16	16	78.62	134.32
Polyp	10	10	29.94	52.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.76
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.24
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.32
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.22
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.78
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.67
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.38
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.69
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.79
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.75
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.32
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.96
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.29
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.97
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.10
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.09
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.14
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.40
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.24
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.66
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.97
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.39
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.21
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.63
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.85
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.27
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.46
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.52
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.75
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.77
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	114.85
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	100.63
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	91.96
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.93
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.70
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.19
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.78
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.03
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.68
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.69
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.29
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.12
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.26
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.65
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	149.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	135.24
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.43
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.38
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	112.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	109.98
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	109.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.58
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.68
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.63
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.87
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.30
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.40
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.18
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	104.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.22
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.63
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.73
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.26
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.47
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.71
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.92
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.71
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.45
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.70
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.92
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	134.32
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	118.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	117.35
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	109.95
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.50
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	96.91
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.21
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.23
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.57
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.45
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.42
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.19
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.70
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	52.37
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	41.71
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	34.18
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	33.21
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.33
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	26.41
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.17
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.14
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.49

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.