Gene detail

Detailed information of OS493_024732-T1 in Lophelia pertusa

Genomic Location: scaffold_117:297729...312872
NR annotation: KAJ7378070.1, Integrator complex subunit 5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004082 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14838 all species →	INTS5_C	Integrator complex subunit 5 C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040316 all species →	Family	Integrator complex subunit 5	Interproscan
IPR029444 all species →	Domain	Integrator complex subunit 5, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31697 all species →	INTEGRATOR COMPLEX SUBUNIT 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034472 all species →	Biological Process	snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_024732-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024732-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

98.6Max TPM

8.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.85	14.24
polyp at pH7 6	18	18	10.13	14.42
coral polyp · control treatment	16	16	7.20	12.62
coral polyp · oil and dispersant treatment	16	16	4.66	17.17
coral polyp · oil treatment	16	16	7.07	10.64
coral polyp · dispersant treatment	16	16	5.44	11.82
Polyp	10	10	21.68	98.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.24
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.04
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.05
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.77
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.33
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.82
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.41
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.37
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.85
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.64
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.71
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.49
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.64
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.22
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.42
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.92
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.90
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.31
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.71
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.50
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.27
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.05
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.38
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.76
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.68
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.26
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.20
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.04
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.42
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.37
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.33
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.15
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.75
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.63
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.45
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.32
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.17
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.15
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.36
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.18
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.18
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.71
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.17
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.75
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.96
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.58
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.70
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.49
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.33
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.75
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.64
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.98
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.74
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.43
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.41
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.53
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.39
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.36
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.20
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.07
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.26
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.82
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.84
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.81
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.37
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.15
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.05
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.75
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.26
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.24
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.37
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	98.64
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	19.49
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	16.17
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.91
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.39
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.24
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.05
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.36

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.