Gene detail

Detailed information of OS493_024755-T1 in Lophelia pertusa

Genomic Location: scaffold_117:542756...553125
NR annotation: KAJ7378092.1, Flotillin-like protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O61491	Flotillin-1 OS=Drosophila melanogaster OX=7227 GN=Flo1 PE=2 SV=1
O13127	Flotillin-1 OS=Carassius auratus OX=7957 GN=flot1 PE=1 SV=1
Q14254	Flotillin-2 OS=Homo sapiens OX=9606 GN=FLOT2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001682 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_024755-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR036013 all species →	Homologous_superfamily	Band 7/SPFH domain superfamily	Interproscan
IPR027705 all species →	Family	Flotillin family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13806 all species →	FLOTILLIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002090 all species →	Biological Process	regulation of receptor internalization	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016600 all species →	Cellular Component	flotillin complex	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0045807 all species →	Biological Process	positive regulation of endocytosis	Interproscan
GO:0070528 all species →	Biological Process	protein kinase C signaling	Interproscan
GO:0072659 all species →	Biological Process	protein localization to plasma membrane	Interproscan
GO:1901890 all species →	Biological Process	positive regulation of cell junction assembly	Interproscan
GO:2000049 all species →	Biological Process	positive regulation of cell-cell adhesion mediated by cadherin	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07192	FLOT; flotillin	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024755-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

61.8Max TPM

31.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	31.65	43.73
polyp at pH7 6	18	18	36.64	57.45
coral polyp · control treatment	16	16	36.05	59.20
coral polyp · oil and dispersant treatment	16	16	39.02	61.76
coral polyp · oil treatment	16	16	26.83	58.23
coral polyp · dispersant treatment	16	16	26.73	50.07
Polyp	10	10	15.07	26.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.73
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.11
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.73
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.19
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.96
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.54
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.03
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.33
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.34
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.83
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.85
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.78
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.45
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.69
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.49
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.46
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.26
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.07
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.57
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.36
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.30
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.24
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.86
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.64
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.74
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.20
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.93
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.08
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.81
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.80
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.29
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.88
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.15
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.21
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.35
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.74
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.74
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.99
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.36
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.76
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.45
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.41
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.36
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.55
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.85
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.33
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.38
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.80
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.39
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.39
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.72
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.38
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.15
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.01
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.74
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.39
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.57
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.98
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.66
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.81
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.89
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.79
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.85
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.07
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.88
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.79
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.95
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.97
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.82
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.43
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.81
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.06
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.64
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.35
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.92
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	26.55
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	24.71
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	18.40
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	11.39
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.26
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.66
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.33
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.07
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.37

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.