Gene detail

Detailed information of OS493_024757-T1 in Lophelia pertusa

Genomic Location: scaffold_117:556160...557689
NR annotation: KAJ7378094.1, ribosomal protein S5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5E988	Small ribosomal subunit protein uS7 OS=Bos taurus OX=9913 GN=RPS5 PE=2 SV=3
P46782	Small ribosomal subunit protein uS7 OS=Homo sapiens OX=9606 GN=RPS5 PE=1 SV=4
P97461	Small ribosomal subunit protein uS7 OS=Mus musculus OX=10090 GN=Rps5 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006057 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00177 all species →	Ribosomal_S7	Ribosomal protein S7p/S5e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036823 all species →	Homologous_superfamily	Small ribosomal subunit protein uS7 domain superfamily	Interproscan
IPR000235 all species →	Family	Small ribosomal subunit protein uS7	Interproscan
IPR023798 all species →	Domain	Small ribosomal subunit protein uS7 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11205 all species →	RIBOSOMAL PROTEIN S7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000028 all species →	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_024757-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024757-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

2,209.5Max TPM

1,249.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1,766.19	2,209.45
polyp at pH7 6	18	18	1,587.15	2,092.83
coral polyp · control treatment	16	16	1,039.86	1,831.72
coral polyp · oil and dispersant treatment	16	16	902.40	1,359.83
coral polyp · oil treatment	16	16	1,155.27	1,888.68
coral polyp · dispersant treatment	16	16	818.94	1,683.92
Polyp	10	10	1,437.32	1,691.18

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,209.45
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,205.80
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,153.31
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,060.53
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,968.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,954.12
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,848.03
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,842.72
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,831.36
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,813.50
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,560.25
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,557.33
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,547.98
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,522.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,518.19
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,476.26
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,360.72
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,360.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,092.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,043.15
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,820.57
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,805.76
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,710.47
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,687.82
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,585.52
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,574.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,572.53
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,568.22
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,566.80
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,566.38
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,480.49
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,474.43
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,471.23
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,204.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,199.69
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,143.76
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,831.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,408.10
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,339.31
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,275.55
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,219.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,206.32
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,117.91
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,010.67
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	974.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	901.47
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	854.59
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	812.40
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	738.93
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	726.42
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	671.37
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	549.18
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,359.83
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,251.46
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,012.81
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	979.02
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	950.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	936.27
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	901.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	869.28
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	866.23
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	833.97
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	831.64
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	782.70
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	736.22
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	734.40
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	723.85
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	669.32
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,888.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,647.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,418.48
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,265.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,258.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,164.60
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,117.94
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,068.66
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,067.17
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,059.54
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,052.44
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	934.50
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	927.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	915.31
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	884.33
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	813.62
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,683.92
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,514.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	944.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	933.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	850.02
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	794.45
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	758.98
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	708.44
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	702.86
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	695.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	661.70
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	647.85
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	607.27
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	606.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	533.67
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	458.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1,691.18
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1,649.41
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1,589.30
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1,453.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1,417.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1,413.43
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1,389.67
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1,375.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1,205.45
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1,187.43

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.