Gene detail

Detailed information of OS493_024785-T1 in Lophelia pertusa

Genomic Location: scaffold_117:743364...747962
NR annotation: KAJ7378120.1, Nucleoside diphosphate-linked moiety X motif 19, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5PQ50	Acyl-coenzyme A diphosphatase NUDT19 OS=Xenopus laevis OX=8355 GN=nudt19 PE=2 SV=1
Q5ZL13	Acyl-coenzyme A diphosphatase NUDT19 OS=Gallus gallus OX=9031 GN=NUDT19 PE=2 SV=1
A8MXV4	Acyl-coenzyme A diphosphatase NUDT19 OS=Homo sapiens OX=9606 GN=NUDT19 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004371 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_024785-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR000086 all species →	Domain	NUDIX hydrolase domain	Interproscan
IPR015797 all species →	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan
IPR039121 all species →	Family	Acyl-coenzyme A diphosphatase NUDT19	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12318 all species →	TESTOSTERONE-REGULATED PROTEIN RP2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016818 all species →	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13355	NUDT19; acyl-coenzyme A diphosphatase NUDT19, mitochondrial	EC:3.6.1.77	Peroxisome	ko04146	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024785-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

32.7Max TPM

7.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.50	11.05
polyp at pH7 6	18	18	8.72	12.56
coral polyp · control treatment	16	16	8.05	24.32
coral polyp · oil and dispersant treatment	16	16	6.11	32.69
coral polyp · oil treatment	16	16	7.70	11.95
coral polyp · dispersant treatment	16	16	3.82	9.53
Polyp	10	10	9.62	17.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.05
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.12
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.38
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.73
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.69
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.44
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.95
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.12
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.90
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.76
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.25
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.80
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.56
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.05
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.63
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.55
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.47
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.39
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.71
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.44
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.56
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.28
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.82
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.53
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.43
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.51
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.32
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.89
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.89
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.93
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.09
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.57
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.60
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.47
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.46
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.82
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.76
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.21
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.61
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.69
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.08
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.97
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.23
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.10
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.03
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.81
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.82
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.82
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.84
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.95
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.16
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.02
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.32
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.99
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.49
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.42
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.36
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.23
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.35
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.59
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.56
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.85
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.70
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.46
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.24
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.92
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.77
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.98
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.82
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.23
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.08
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.88
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.01
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.21
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.46
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.28
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.49
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.83

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.