Gene detail

Detailed information of OS493_024814-T1 in Lophelia pertusa

Genomic Location: scaffold_117:1002070...1005186
NR annotation: KAJ7378149.1, Peptidyl-prolyl cis-trans isomerase NIMA-interacting protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5BIN5	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Bos taurus OX=9913 GN=PIN1 PE=2 SV=1
Q13526	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Homo sapiens OX=9606 GN=PIN1 PE=1 SV=1
Q9QUR7	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Mus musculus OX=10090 GN=Pin1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008728 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00639 all species →	Rotamase	PPIC-type PPIASE domain	Domain	Interproscan
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000297 all species →	Domain	Peptidyl-prolyl cis-trans isomerase, PpiC-type	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR051370 all species →	Family	Peptidyl-prolyl cis-trans isomerase Pin1	Interproscan
IPR046357 all species →	Homologous_superfamily	Peptidyl-prolyl cis-trans isomerase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10657 all species →	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09578	PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	EC:5.2.1.8	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024814-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

69.5Max TPM

34.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	35.11	47.52
polyp at pH7 6	18	18	37.15	52.37
coral polyp · control treatment	16	16	40.82	69.45
coral polyp · oil and dispersant treatment	16	16	29.99	53.26
coral polyp · oil treatment	16	16	40.29	69.55
coral polyp · dispersant treatment	16	16	29.36	53.19
Polyp	10	10	26.41	47.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.52
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.51
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.09
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.22
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.43
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.42
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.35
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.48
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.20
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.16
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.27
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.64
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.37
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.17
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.42
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.68
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.11
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.09
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.19
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.79
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.17
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.77
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.27
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.67
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.30
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.34
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.04
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.45
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.21
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.71
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.30
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.88
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.02
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.58
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.06
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.47
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.55
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.77
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.11
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.71
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.92
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.26
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.93
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.94
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.57
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.11
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.56
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.99
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.12
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.80
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.94
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.37
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.49
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.36
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.66
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.34
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.25
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.18
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.54
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.28
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.47
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.56
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.07
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.19
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.45
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.09
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.09
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.24
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.28
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.52
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.35
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.78
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.08
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.20
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	47.42
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	46.70
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	32.07
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	31.23
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	30.94
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	26.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	20.68
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	14.25
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.50

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.