Gene detail

Detailed information of OS493_024826-T1 in Lophelia pertusa

Genomic Location: scaffold_117:1108048...1109149
NR annotation: KAJ7378161.1, Nuclear factor of kappa light polypeptide protein enhancer in B-cells inhibitor-like 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R2H1	NF-kappa-B inhibitor-like protein 1 OS=Rattus norvegicus OX=10116 GN=Nfkbil1 PE=2 SV=2
O88995	NF-kappa-B inhibitor-like protein 1 OS=Mus musculus OX=10090 GN=Nfkbil1 PE=2 SV=1
Q5TM19	NF-kappa-B inhibitor-like protein 1 OS=Macaca mulatta OX=9544 GN=NFKBIL1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008929 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038753 all species →	Family	NF-kappa-B inhibitor-like protein 1	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15263 all species →	I-KAPPA-B-LIKE PROTEIN IKBL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043124 all species →	Biological Process	negative regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09256	NFKBIL1; NF-kappa-B inhibitor-like protein 1	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024826-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

32.5Max TPM

8.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.28	14.03
polyp at pH7 6	18	18	9.69	15.76
coral polyp · control treatment	16	16	9.16	17.19
coral polyp · oil and dispersant treatment	16	16	9.11	32.48
coral polyp · oil treatment	16	16	7.44	15.92
coral polyp · dispersant treatment	16	16	3.31	6.69
Polyp	10	10	12.24	22.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.03
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.48
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.24
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.73
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.67
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.12
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.58
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.90
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.65
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.04
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.96
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.68
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.88
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.84
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.78
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.31
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.70
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.82
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.77
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.19
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.03
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.87
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.52
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.49
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.17
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.19
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.08
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.92
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.42
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.70
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.14
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.48
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.64
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.49
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.80
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.74
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.29
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.65
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.86
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.67
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.35
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.26
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.94
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.57
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.56
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.27
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.96
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.83
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.46
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.28
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.01
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.93
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.92
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.69
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.60
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.58
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.71
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.61
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.32
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.04
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.57
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.11
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.82
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.50
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	22.46
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.44
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.36
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.43
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.76
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.63
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.15
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.01
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.80

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.