Gene detail

Detailed information of OS493_024854-T1 in Lophelia pertusa

Genomic Location: scaffold_118:331636...334960
NR annotation: KAJ7371514.1, hypothetical protein OS493_024854 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5T6J7	Probable gluconokinase OS=Homo sapiens OX=9606 GN=IDNK PE=1 SV=1
Q8R0J8	Probable gluconokinase OS=Mus musculus OX=10090 GN=Idnk PE=1 SV=2
Q54PI5	Probable gluconokinase OS=Dictyostelium discoideum OX=44689 GN=DDB_G0284557 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005899 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13671 all species →	AAA_33	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006001 all species →	Family	Carbohydrate kinase, thermoresistant glucokinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43442 all species →	GLUCONOKINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0046177 all species →	Biological Process	D-gluconate catabolic process	Interproscan
GO:0046316 all species →	Molecular Function	gluconokinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00851	idnK, gntK; gluconokinase	EC:2.7.1.12	Pentose phosphate pathway	ko00030	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024854-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

65.7Max TPM

27.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	19.97	28.74
polyp at pH7 6	18	18	20.63	32.06
coral polyp · control treatment	16	16	28.50	53.06
coral polyp · oil and dispersant treatment	16	16	41.87	65.72
coral polyp · oil treatment	16	16	29.16	45.13
coral polyp · dispersant treatment	16	16	32.24	63.05
Polyp	10	10	15.70	27.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.74
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.57
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.65
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.96
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.04
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.02
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.17
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.80
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.40
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.59
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.24
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.11
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.77
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.06
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.59
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.89
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.24
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.59
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.04
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.93
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.21
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.80
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.36
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.01
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.91
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.47
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.61
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.80
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.38
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.90
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.68
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.34
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.71
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.84
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.58
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.27
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.13
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.72
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.12
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.77
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.73
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.07
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.16
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.70
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.57
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.28
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.54
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.61
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.93
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.23
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.12
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.15
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.87
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.31
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.50
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.90
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.26
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.18
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.51
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.67
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.99
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.32
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.96
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.13
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.87
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.16
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.90
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.85
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.66
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	27.11
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	22.59
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	18.43
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.12
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.68
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.89
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.97
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.65
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.57

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.