Gene detail

Detailed information of OS493_024868-T1 in Lophelia pertusa

Genomic Location: scaffold_118:616600...629809
NR annotation: KAJ7371528.1, hypothetical protein OS493_024868 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009840 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05837 all species →	CENP-H	Centromere protein H (CENP-H)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040034 all species →	Family	Centromere protein H	Interproscan
IPR008426 all species →	Domain	Centromere protein H, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48122 all species →	CENTROMERE PROTEIN H	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0007059 all species →	Biological Process	chromosome segregation	Interproscan
GO:0043515 all species →	Molecular Function	kinetochore binding	Interproscan
GO:0051382 all species →	Biological Process	kinetochore assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11500	CENPH; centromere protein H	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024868-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

30.6Max TPM

3.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.15	14.36
polyp at pH7 6	18	17	4.85	11.14
coral polyp · control treatment	16	16	4.14	30.61
coral polyp · oil and dispersant treatment	16	16	3.28	19.77
coral polyp · oil treatment	16	16	2.98	6.96
coral polyp · dispersant treatment	16	16	2.16	5.13
Polyp	10	10	5.33	11.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.02
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.74
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.96
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.41
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.38
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.71
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.08
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.61
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.52
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.36
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.14
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.02
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.86
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.32
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.27
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.88
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.05
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.09
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.94
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.49
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.12
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.61
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.89
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.51
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.41
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.22
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.05
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.04
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.71
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.28
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.18
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.77
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.17
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.08
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.42
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.20
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.93
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.87
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.80
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.77
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.90
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.52
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.03
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.84
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.56
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.25
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.08
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.86
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.98
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.90
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.26
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.07
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.67
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	11.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.54
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.85
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.80
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.01
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.28
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.99
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.97

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.