Gene detail

Detailed information of OS493_024923-T1 in Lophelia pertusa

Genomic Location: scaffold_119:194389...198031
NR annotation: KAJ7357412.1, hypothetical protein OS493_024923 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005941 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19277 all species →	GPAT_C	Glycerol-3-phosphate acyltransferase C-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045520 all species →	Domain	GPAT/DHAPAT, C-terminal domain	Interproscan

PANTHER

No PANTHER signature was detected for OS493_024923-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_024923-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_024923-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_024923-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

34.3Max TPM

12.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.77	31.30
polyp at pH7 6	18	17	16.23	34.33
coral polyp · control treatment	16	16	13.87	22.01
coral polyp · oil and dispersant treatment	16	16	7.97	13.72
coral polyp · oil treatment	16	16	12.82	22.71
coral polyp · dispersant treatment	16	16	8.25	15.99
Polyp	10	9	14.87	26.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.90
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.17
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.93
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.67
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.22
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.89
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.21
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.80
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.48
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.05
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.02
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.46
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.30
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.33
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.54
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.29
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.14
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.36
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.72
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.63
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.56
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.72
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.42
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.48
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.66
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.37
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.05
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.46
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.92
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.06
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.59
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.36
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.28
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.57
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.33
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.24
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.69
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.67
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.72
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.45
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.39
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.08
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.96
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.75
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.56
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.41
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.15
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.99
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.74
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.91
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.71
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.72
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.70
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.24
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.58
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.25
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.63
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.62
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.43
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.30
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.20
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.33
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.55
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.61
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.99
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.36
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.25
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.79
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.57
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.10
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.26
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.73
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.35
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.77
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.65
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.50
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.92
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.50
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.78
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	26.56
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.81
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.92
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.72
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.40
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.04
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.40
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.