Gene detail

Detailed information of OS493_025064-T1 in Lophelia pertusa

Genomic Location: scaffold_120:290293...291647
NR annotation: KAJ7328188.1, Cleavage inducing molecular chaperone [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007226 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14901 all species →	Jiv90	Cleavage inducing molecular chaperone	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032843 all species →	Domain	Cleavage inducing molecular chaperone, Jiv	Interproscan
IPR052317 all species →	Family	Viral replication and host interaction regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44665 all species →	DNAJ HOMOLOG SUBFAMILY C MEMBER 14	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_025064-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025064-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025064-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

116.2Max TPM

26.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	19.34	35.70
polyp at pH7 6	18	18	18.09	29.86
coral polyp · control treatment	16	16	38.05	116.16
coral polyp · oil and dispersant treatment	16	16	38.13	82.56
coral polyp · oil treatment	16	16	32.28	47.86
coral polyp · dispersant treatment	16	16	22.30	40.31
Polyp	10	10	15.18	32.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.70
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.17
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.23
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.50
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.02
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.91
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.39
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.56
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.93
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.36
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.71
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.36
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.75
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.40
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.80
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.41
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.24
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.37
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.06
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.79
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.70
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.68
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.65
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.10
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.52
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.25
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.41
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.90
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.17
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	116.16
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.96
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.93
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.18
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.03
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.47
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.18
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.80
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.03
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.74
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.52
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.56
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.29
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.04
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.80
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.23
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.05
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.58
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.34
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.03
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.38
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.70
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.31
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.07
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.71
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.56
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.70
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.64
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.41
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.46
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.88
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.89
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.60
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.70
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.12
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.31
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.33
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.79
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.08
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.77
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.88
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.12
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.57
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.32
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.94
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.07
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	32.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.05
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.98
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.39
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.09
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.70
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.53
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.72

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.