Gene detail

Detailed information of OS493_025068-T1 in Lophelia pertusa

Genomic Location: scaffold_120:299401...315112
NR annotation: KAJ7328192.1, hypothetical protein OS493_025068 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O08795	Glucosidase 2 subunit beta OS=Mus musculus OX=10090 GN=Prkcsh PE=1 SV=1
P14314	Glucosidase 2 subunit beta OS=Homo sapiens OX=9606 GN=PRKCSH PE=1 SV=2
Q28034	Glucosidase 2 subunit beta OS=Bos taurus OX=9913 GN=PRKCSH PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002392 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13015 all species →	PRKCSH_1	Glucosidase II beta subunit-like protein	Family	Interproscan
PF12999 all species →	PRKCSH-like	Glucosidase II beta subunit-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009011 all species →	Homologous_superfamily	Mannose-6-phosphate receptor binding domain superfamily	Interproscan
IPR044865 all species →	Domain	MRH domain	Interproscan
IPR036607 all species →	Domain	Glucosidase 2 subunit beta-like	Interproscan
IPR028146 all species →	Domain	Glucosidase II beta subunit, N-terminal	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR039794 all species →	Family	Glucosidase II beta subunit-like	Interproscan
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12630 all species →	N-LINKED OLIGOSACCHARIDE PROCESSING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006491 all species →	Biological Process	N-glycan processing	Interproscan
GO:0017177 all species →	Cellular Component	glucosidase II complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08288	PRKCSH; protein kinase C substrate 80K-H	-	Lectins	ko04091	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_025068-T1 global co-expression network