Gene detail

Detailed information of OS493_025088-T1 in Lophelia pertusa

Genomic Location: scaffold_120:937101...937787
NR annotation: KAJ7328208.1, cerebellar neuron development [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7FDB3	Nanos homolog 1 OS=Danio rerio OX=7955 GN=nanos1 PE=3 SV=1
P60322	Nanos homolog 2 OS=Mus musculus OX=10090 GN=Nanos2 PE=1 SV=2
Q80WY3	Nanos homolog 1 OS=Mus musculus OX=10090 GN=Nanos1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002643 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05741 all species →	zf-nanos	Nanos RNA binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024161 all species →	Domain	Zinc finger, nanos-type	Interproscan
IPR008705 all species →	Family	Nanos/Xcat2	Interproscan
IPR038129 all species →	Homologous_superfamily	Nanos domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12887 all species →	NANOS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0048477 all species →	Biological Process	oogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18741	NANOS1, NOS1; protein nanos 1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025088-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

76.6Max TPM

19.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	20.81	33.47
polyp at pH7 6	18	18	23.10	38.32
coral polyp · control treatment	16	16	20.75	32.43
coral polyp · oil and dispersant treatment	16	16	12.92	19.58
coral polyp · oil treatment	16	16	15.25	22.89
coral polyp · dispersant treatment	16	16	15.84	51.51
Polyp	10	10	26.52	76.60

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.27
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.70
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.73
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.97
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.79
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.39
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.91
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.41
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.70
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.02
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.71
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.16
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.30
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.71
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.50
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.32
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.28
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.12
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.83
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.03
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.23
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.56
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.04
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.53
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.11
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.29
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.66
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.96
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.52
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.64
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.65
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.45
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.43
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.48
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.34
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.62
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.12
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.18
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.67
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.44
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.80
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.09
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.65
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.92
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.84
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.22
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.33
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.13
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.06
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.54
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.46
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.04
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.98
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.41
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.18
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.77
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.41
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.92
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.02
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.29
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.85
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.60
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.51
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.34
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.95
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.72
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.96
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.89
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.66
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.77
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.10
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.38
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.77
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.32
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.01
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	76.60
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	52.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.40
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	28.22
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	22.71
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.32
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.22
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.31

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.