Gene detail

Detailed information of OS493_025097-T1 in Lophelia pertusa

Genomic Location: scaffold_120:984933...989276
NR annotation: KAJ7328217.1, hypothetical protein OS493_025097 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60806	Serine/threonine-protein kinase PLK3 OS=Mus musculus OX=10090 GN=Plk3 PE=1 SV=2
Q9H4B4	Serine/threonine-protein kinase PLK3 OS=Homo sapiens OX=9606 GN=PLK3 PE=1 SV=2
Q9R011	Serine/threonine-protein kinase PLK3 OS=Rattus norvegicus OX=10116 GN=Plk3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001661 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00659 all species →	POLO_box	POLO box duplicated region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000959 all species →	Domain	POLO box domain	Interproscan
IPR033695 all species →	Domain	Second polo-box domain	Interproscan
IPR036947 all species →	Homologous_superfamily	POLO box domain superfamily	Interproscan
IPR033701 all species →	Domain	First polo-box domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24345 all species →	SERINE/THREONINE-PROTEIN KINASE PLK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025097-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025097-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

26.0Max TPM

8.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.43	17.85
polyp at pH7 6	18	18	10.78	26.03
coral polyp · control treatment	16	16	9.19	16.79
coral polyp · oil and dispersant treatment	16	15	6.32	13.36
coral polyp · oil treatment	16	16	7.36	11.77
coral polyp · dispersant treatment	16	16	6.99	14.00
Polyp	10	10	6.55	15.51

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.85
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.45
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.43
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.11
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.62
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.23
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.10
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.44
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.70
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.62
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.55
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.95
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.03
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.32
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.18
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.54
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.56
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.21
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.57
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.03
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.06
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.56
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.98
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.83
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.95
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.83
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.29
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.73
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.79
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.76
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.68
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.63
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.47
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.03
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.99
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.25
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.85
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.32
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.10
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.94
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.79
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.07
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.36
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.08
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.82
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.85
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.37
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.18
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.79
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.41
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.50
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.60
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.77
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.19
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.14
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.26
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.24
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.24
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.08
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.05
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.25
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.84
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.71
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.14
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.62
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.93
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.56
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.45
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.39
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.79
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.52
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.37
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.48
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.33
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.49
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.86
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.57
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.55
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.67
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.01
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.61
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.23
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.03

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.