Gene detail

Detailed information of OS493_025230-T1 in Lophelia pertusa

Genomic Location: scaffold_122:695216...695689
NR annotation: KAJ7383903.1, NADH dehydrogenase 1 alpha subcomplex subunit 12 ndufa12/DAP13 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O97725	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Bos taurus OX=9913 GN=NDUFA12 PE=1 SV=1
Q0MQ86	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Gorilla gorilla gorilla OX=9595 GN=NDUFA12 PE=2 SV=1
Q9UI09	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Homo sapiens OX=9606 GN=NDUFA12 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010223 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05071 all species →	NDUFA12	NADH ubiquinone oxidoreductase subunit NDUFA12	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007763 all species →	Family	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12910 all species →	NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B17.2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005747 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0032981 all species →	Biological Process	mitochondrial respiratory chain complex I assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025230-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025230-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

331.8Max TPM

56.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	65.49	83.40
polyp at pH7 6	18	18	70.05	106.50
coral polyp · control treatment	16	16	61.85	299.19
coral polyp · oil and dispersant treatment	16	16	58.03	331.78
coral polyp · oil treatment	16	16	44.40	69.37
coral polyp · dispersant treatment	16	16	27.60	41.29
Polyp	10	10	64.90	111.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	83.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.29
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.43
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.01
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.80
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.51
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.71
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.97
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.19
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.97
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.83
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.70
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.95
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.42
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.66
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	106.50
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	94.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.24
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.44
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.78
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.95
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.80
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.78
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.64
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.33
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.90
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.98
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.47
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.40
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.22
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.65
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.24
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	299.19
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.13
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.56
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.71
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.53
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.89
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.31
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.14
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.84
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	331.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.74
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.96
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.13
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.59
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.06
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.10
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.61
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.65
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.13
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.11
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.91
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.91
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.59
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.37
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.30
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.02
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.78
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.18
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.14
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.92
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.52
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.30
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.44
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.45
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.29
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.34
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.29
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.72
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.36
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.06
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.68
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.64
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.80
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.86
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.35
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.02
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.15
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.62
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	111.89
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	72.62
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	71.95
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	69.15
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	67.19
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	64.44
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	57.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	56.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	45.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	31.87

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.