Gene detail

Detailed information of OS493_025325-T1 in Lophelia pertusa

Genomic Location: scaffold_123:863976...872562
NR annotation: KAJ7378009.1, Mitochondrial import receptor subunit TOM70 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O94826	Mitochondrial import receptor subunit TOM70 OS=Homo sapiens OX=9606 GN=TOMM70 PE=1 SV=1
Q75Q39	Mitochondrial import receptor subunit TOM70 OS=Rattus norvegicus OX=10116 GN=Tomm70 PE=1 SV=1
Q9CZW5	Mitochondrial import receptor subunit TOM70 OS=Mus musculus OX=10090 GN=Tomm70 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007265 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF13414 all species →	TPR_11	TPR repeat	Repeat	Interproscan
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46208 all species →	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM70	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008320 all species →	Molecular Function	protein transmembrane transporter activity	Interproscan
GO:0030150 all species →	Biological Process	protein import into mitochondrial matrix	Interproscan
GO:0030943 all species →	Molecular Function	mitochondrion targeting sequence binding	Interproscan
GO:0031307 all species →	Cellular Component	obsolete integral component of mitochondrial outer membrane	Interproscan
GO:0045039 all species →	Biological Process	protein insertion into mitochondrial inner membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17768	TOM70; mitochondrial import receptor subunit TOM70	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025325-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

55.1Max TPM

29.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	32.67	40.42
polyp at pH7 6	18	18	35.68	46.24
coral polyp · control treatment	16	16	34.37	49.64
coral polyp · oil and dispersant treatment	16	16	26.42	46.31
coral polyp · oil treatment	16	16	30.85	55.13
coral polyp · dispersant treatment	16	16	19.48	44.73
Polyp	10	10	27.11	46.35

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.42
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.54
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.30
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.27
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.27
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.83
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.24
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.87
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.26
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.61
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.35
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.24
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.24
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.01
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.13
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.03
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.26
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.24
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.04
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.48
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.72
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.98
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.64
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.66
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.44
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.79
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.51
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.39
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.49
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.48
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.83
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.91
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.57
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.96
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.66
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.65
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.04
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.71
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.55
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.99
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.97
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.92
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.02
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.05
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.13
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.79
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.71
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.73
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.77
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.26
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.71
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.70
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.17
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.01
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.89
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.77
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.64
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.73
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.52
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.19
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.02
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.73
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.08
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.92
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.34
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.85
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.36
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.56
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.73
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.47
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	46.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	34.59
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	30.93
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	26.59
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	24.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	24.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	22.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.78
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.63
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.81

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.