Detailed information of OS493_025331-T1 in Lophelia pertusa

Genomic Location: scaffold_123:910316...917257
NR annotation: KAJ7378015.1, Ribonuclease H2 subunit B [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5HZP1Ribonuclease H2 subunit B OS=Xenopus laevis OX=8355 GN=rnaseh2b PE=2 SV=1
Q5TBB1Ribonuclease H2 subunit B OS=Homo sapiens OX=9606 GN=RNASEH2B PE=1 SV=1
Q3ZBI3Ribonuclease H2 subunit B OS=Bos taurus OX=9913 GN=RNASEH2B PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006988 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09468
all species →		RNase_H2-Ydr279Ydr279p protein family (RNase H2 complex component) wHTH domainDomainInterproscan
PF17745
all species →		Ydr279_NYdr279p protein triple barrel domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019024
all species →		DomainRibonuclease H2 subunit B, wHTH domainInterproscan
IPR041195
all species →		DomainRnh202, triple barrel domainInterproscan
IPR040456
all species →		FamilyRibonuclease H2 subunit BInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13383
all species →		RIBONUCLEASE H2 SUBUNIT BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0032299
all species →		Cellular Componentribonuclease H2 complexInterproscan
GO:0005654
all species →		Cellular ComponentnucleoplasmInterproscan
GO:0006401
all species →		Biological ProcessRNA catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_025331-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_025331-T1 global co-expression network
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