Detailed information of OS493_025392-T1 in Lophelia pertusa

Genomic Location: scaffold_124:891721...894024
NR annotation: KAJ7371491.1, NPC intracellular cholesterol transporter 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6T3U3NPC1-like intracellular cholesterol transporter 1 OS=Rattus norvegicus OX=10116 GN=Npc1l1 PE=1 SV=1
Q6T3U4NPC1-like intracellular cholesterol transporter 1 OS=Mus musculus OX=10090 GN=Npc1l1 PE=1 SV=1
Q9UHC9NPC1-like intracellular cholesterol transporter 1 OS=Homo sapiens OX=9606 GN=NPC1L1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001652 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16414
all species →		NPC1_NNiemann-Pick C1 N terminusDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032190
all species →		DomainNiemann-Pick C1, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45727
all species →		NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0015918
all species →		Biological Processsterol transportInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0032934
all species →		Molecular Functionsterol bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_025392-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_025392-T1 global co-expression network
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