Gene detail

Detailed information of OS493_025409-T1 in Lophelia pertusa

Genomic Location: scaffold_125:149355...165645
NR annotation: KAJ7356300.1, Dedicator of cytokinesis protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_025409-T1

ATGCGGATGATTATTGGACTGAAAATCAGCCAGATGTGGCATTTATTAGGTGATCACAAAACATTTTTCATTCCTGGTTTAGTTGGACCGTTTCTGGAGATGACGTTGATTCCACACAGCGAACTTCGACGAGCCACAATTCCTCTTTTCTTTGACATGATCCAGTGCGAGTATGCTATCAAAGGCAATTTCATGTCGGTTGAAAGTGAAATGATCAGCAAACTTGACGTGCTTGTTGAGGGTGGTAAAGGGGACACGCAATACAAGGAATTGTTTTATGAGATCTTGTCCGAACTCTTCAACCCACTTCCGCCACAGCGAAAAGAGGACGGTATCAGATTTGTTGGCCTGGTTACCAAGCTCATGGAGAGACTGCTGGACTACAGGACCGTCGTATTCGGAGATGACAACATTGACAATCGGATGAGCTGCACTGTTAATGTCCTGACCTTTTACAAAGAAATCAAGAAAGAAGAAATGTATGATCGGTACGTGTACAAGTTGTGCGATCTTCACCTCAGTGTTGAGAATTACAATGAAGCTGCCTTCACGCTTCTCAAAAGAGCCGATGACCTCGAGTGGACTGATGATTCAGTTTTTTCGAGCCAAGGAAAGTATCGTGCCAGTACTCAGCGACAACTAAAAGAAATGCTCTACAAGGACATCATTGACTACTTTGACAAAGGAAAGTGCTGGGAGTATGCCATTAAAAGATGCAAAGAGCTCGCCGCACAGTACGAGGAACACACCTTTGATTTCATTCAGCTCAGCCAGATTTTGGTTAAACAAGCCAGGTTTTATGACAATATCATCAAGGTTGTCCGCGGGGACCCTGAGTACTACAAAGTTGCCTTTTATGGATTTGGCTTCCCAACATTCCTTAGGAACAAAATTTTCGTCTATCGTGGCAAGGAGTACGAGAAAATTGGCGAGTTTGTTGTTCGTATTCAAAGTCAGTACCCTAGTGCCCAGCTTCTCAAGATGAAGGACGTCATTACCAATGAGATCAAGCATTCAAACCAACAGTTTCTCCAAATCAACAAAGTAGACCCAGTGCCCGTGGAGATGCGGAAGTTTCAGAGAAAGAACATTCTGGAACAGATAACCAAATTCTATGAAGGCAACAACGTGAACCACTTCCAGTTTTCCAGGGTAGTGCACAAAGGAGAGGTTAATAAGGACAACGAATTCTCGACGATGTGGGTGGAAAAAACAAGGATGTATACCAAGTTCACATTTCCTGGTATTTTGTGCTGGTTCGAGGCATTTTCCATCGAGATGGAGGAAATAAGTCCTATACGGAATGCCGTGGACTTCATGGATTCCGCCAATAAGCTGCTCCGTTCTCTGATTGGCCGACATAAGGTGGACCCCAACTTGAACATCAATCCCCTGAGCATGAAGCTTAACGGAATTATCGACGCTGCCGTGATGGGAGGGATCAAGAATTATGAAGAGGCATTTCTCACTCCAAAATATATCAGAAACAACCCTGATGACGAAGCACACGTGGAGAAACTCAAAGATTTGATTGTTGAACAGGTGGACATTTTAGAGGAAGGAATGTCTCTACACGGAAATCGCGTCTCCGCTGATTTAAAACCTTTGCACGAAAATCTCGAGAAACGCTACAAGGAATTGAAGGCCAAGACCGCGCCATTTAAAAAGGCTCGTGTTAGTGTCACGACTAATCCTCGGACACCTGTCGACACATCTCCCTTCGGAGGCAGATCGATGACAACTGTCCGAAGATCGGACAAACCTGTATTCTCCGCTCGAGACAGCCTGGATCAGATGAACACGAAGTCGACTTACGGCGGATGGACCGACTCTATTACTTCTAAGAACAATGAAAACAGTCCCCCTCCACTTCCGATCAAGTCCATGACCATGTCCGGTGGTATGGCAGGGCGTGGCCGATCCCCGAGGAGAAAAACAACCGAAGTACCGATGTCACACCGGGAGGAAGGGTTTATGAGCCCGGCCAGTCCTTCCTCGGAAATCGCCCCTGCTAAGCCGCCTCGACCACAACCCCAGCCACACCACCCTGTAGCACAGCCACACCACCCCCCGGTACTGCCACAAAAGAGTTCGACGAAAAGTAAGTCGGCTGACGTCCATCAGCGCTCCAGCACTGAGTCCAGTGGATCAGACGGTACTGAGCAGGTGGAGCAGTCTCCAGCCATTCCACCGCGCGCGTCCATGATGGCAAAGCAAAAAGACTCGCCTCCAGTCCCCCCCAAGAATAGATGA

Transcript

OS493_025409-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14185	Dedicator of cytokinesis protein 1 OS=Homo sapiens OX=9606 GN=DOCK1 PE=1 SV=2
Q8BUR4	Dedicator of cytokinesis protein 1 OS=Mus musculus OX=10090 GN=Dock1 PE=1 SV=3
Q9H7D0	Dedicator of cytokinesis protein 5 OS=Homo sapiens OX=9606 GN=DOCK5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001194 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20421 all species →	DHR-2_Lobe_C	DHR-2, Lobe C	Repeat	Interproscan
PF06920 all species →	DHR-2_Lobe_A	DHR-2, Lobe A	Repeat	Interproscan
PF20422 all species →	DHR-2_Lobe_B	DHR-2, Lobe B	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046773 all species →	Domain	DOCKER, Lobe C	Interproscan
IPR043161 all species →	Homologous_superfamily	Dedicator of cytokinesis, C-terminal, lobe A	Interproscan
IPR026791 all species →	Family	Dedicator of cytokinesis	Interproscan
IPR027357 all species →	Domain	DOCKER domain	Interproscan
IPR046769 all species →	Domain	DOCKER, Lobe A	Interproscan
IPR046770 all species →	Domain	DOCKER, Lobe B	Interproscan
IPR043162 all species →	Homologous_superfamily	Dedicator of cytokinesis, C-terminal, lobe C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45653 all species →	DEDICATOR OF CYTOKINESIS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13708	DOCK1; dedicator of cytokinesis protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_025409-T1 global co-expression network