Gene detail

Detailed information of OS493_025411-T1 in Lophelia pertusa

Genomic Location: scaffold_125:168545...200212
NR annotation: KAJ7356302.1, Dedicator of cytokinesis protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_025411-T1

ATGACAGTCTGGAAAGCACTCGAGACTCCGCAGCTTGGTGTAGCCATCTATAACTTCCACGGAAAAGGCTTGTATCAACTCAAACTCCAGCTTGGTGAGACTGTTCAAATCCTTGAAGAGTGTCAAGGATGGTTCCGAGGGTTTTCATTGAGGAACAAAGCTGCCAAGGGTATATTTCCAACGTCGTATATTTACATTAAAGATGCCAAAGATGAATCCTCAAGTGGGACAGAAAGTGTATTTAAGGAGGAAGCTCTGGTTGAAGAACTGACTTCTGTTTTAAGAGAATGGGGAGCCATGTGGAAACAGGTCTATTTGAGGAAGGAAGAAACCCTTTTTCATGATGTGAAAAGTCTGATGTTAGAATTAATGGATTGGCGAAGGCAAATCTTAGCTAAAGCACTTCCAGTGGACCAGTTGAAACAACTTAAGCAGAGAGTTACTCAAACAATAGATTATGGAAACAGGACGTTAGGTTTGGATCTTGTTGTACGTGATCCTGAGGGTAACATAATCAATCCTGATTCAACAGGGGCTATTCAACTTTACAGAAGGCATGTCAGCACATCAAACAGAATAAAGACGGCGTCAAGAAGAGCTGAAACACCCAAGAAAGAAGTTGCATTTTATACAGCACACAGTGTTTATGCCAAGATTAAGGTTGTAGTGTGCAATATCACTGATGATGCACAGGTGTTCCTCTCACTGTATGATGCAAAAGATGAGCGCTTTATCAGTGAACAGTTCTTGGTTTCTTGGGGTAAAGAAGGAATGCCAAAAGATATTGACAGATTTGAAAACCTTTCAGTCCTTTTTACAGACTTGGGTGCAAAAGACTTAAAACGAGAACCAGTTTACATGGTGTGCCAGATTGTTAGAGTAGGGCGTATGGACATCAAGGAGACAGATAACAAAAAGCTAACTCACAATCTAAGAAGACCATTTGGTATTGGCTTGTTTAACATTGGGGACTTGTTTAATGGCACTGCTCAGTACGACGAAGACAAAGAACATTTCCTGCGACTTCTTCCTATTCCAGACCAGTCATTTTCAATTAACTCTTGGATTAAGCGGATGATTTCTCAGCCACAGGAAGGAATTAAGGGAGAAGGGGTTAAAATCTGTTTGAAGCTTATTTCAGGAGATGTTGATCAGATACGGGAGGAGCATCCACTTCTTGTAACAAAACAAACAGCTATTGCACGCAAACTTGGTTTTCCTGAAGTCATCATGCCAGGTGATCTTCGTAATGACTTGTATCTTACAATTCACTCCGGGGAATTTGAAAAAGGTAAAAAGACAGCATATAAGAACATTGAGGTCACAATGCATGTTCTCTCAGATGATGGCACAATTCTTGAGAATGTGATCTGCTTCGGTGCAGGAGAGGCACTTGTCAGTGAATACCGCTCAGTTATTTTTTACCATGTTGGCAAACCTGAATGGGTGGAGACAATCAAGTTAGTCATTCCAATAGAACAGTTCCAGAACTCACATGTGAGGATTATGTTTAAACACAGATCTGCAAATGAAGAGAGAGACAGAACTCAAAAGTGCTTTGCCTTTTCACACACACAACTCATGTACAATGATGGAACTACACTACAGGATGGAACACATGAACTTTTGGTCTACAAGAATGATCACGGAAAGATACCACATCCCAAGGCTTATATTCATCTTCCTTCCAAGAAAGACGACGTTCTTCCTGTCAAGTCAAACAACATGCCATTTACACCAACAAATGACAAACTGAAGATTGAAACTCTTCTGTGTTCAACAAAACTCACACAAAACGTTGAGCTTCTTGGACTGCTCAAGTGGAATTCCATGGTTGGAAAATTGAAACATATTCTAGTTAATGTGATGAAAGTCAGTGGTGAAGAAATCGTCAAGTTCTTGACAGATACTTTTGATGCGCTGTTTGCAATTTTGATGGAGCATGGTAACAAGTATGACAAACTTGTATTTGATGCATTGGTATTTACAATCAGTTTGCTGGCAGACAAAAAGTATCACCACTTCAGACCGGTTTTGGATGCTTACATTGAGGATTTGTTTGGAGCCACAAAAGCAGACCACATTCTCATCTCTGTTTTTATGGAGTATATTAACTATGCAACAAAAGAACCACAACCGGATAGAATACGAATGGATCTCCTTCTCAAGGCCATGAAGGCCATGGAGTACATTTTCAAATTCATTGTCCAGTCAAGAATTTTGTTTGAAAGAGCGGTTGGTGACAAGGGTCAGTCCGAATTTGAAGAGAACTTGAGAAAACTTTTCCAGGCTCTGGTGCAATTGATGGCAGATGTTAAGAACGAGACACTTCTGACTCAGGGGGCTGCCTTGAAGTACTTCCCAGCTACTTTTGTAGACTTGATGCAAGTGTTTGATTGCAAAGAACTCAGTCACTATGCTAGGGAATTCATCGAGAAAATTCCAGAGAAGAGGTTAACTTCGCAGAAAATGGACTGCATCCACAACATGGTGAAGACCAAGCTGTTTGAAGACAAAGAATCTCGGTATGTTTTGCTTCCCATGGTTGTTGAACAACTGAAAAACGAGATGAAGAAAACTGAAGAAATGAAGAGCTGTATTGACATCCTGAACGATATTCTGATCACTCTGACAAGAAATGATGTGGGCTCTACGCATGATGATGTTCTGCTGTTGGCGACGTCACTGTTACGTGTTGTGGTGAAAGAAGTGATCATGATGGATCGATCACTAGCTGTTGTGGGTAACTATGTAGCGTGCTTGGTGGCCATGCTGCAGTTGATGGATGAGAAACATTACCAAATGTATGTGCAACACTTTCCATCCGATCAAGATCTACTGGATTTCCTCATGGAGCTTTTCATGTTATTTCGTGAGTTCGTAAGCAACAATATCTTTCCCAAAGACTGGATGGTGATGACCATGGTTCAGAACAGTGTGATCTTGGATGCCATTCAGTATTTTTCTGAAGCGATGCAGGAGCACTTTGGAGCTGGTGCATTTGAAGATCAGTTGTGGAACAACTTTTTCCATCTGGCTGTGGCGTTTGTGACCCAGGAATCACTGCAGTTGGAAAGCTTCAGCACCACAAAACAAGACAAAATTTTAGAAAAGTGA

Transcript

OS493_025411-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14185	Dedicator of cytokinesis protein 1 OS=Homo sapiens OX=9606 GN=DOCK1 PE=1 SV=2
Q8BUR4	Dedicator of cytokinesis protein 1 OS=Mus musculus OX=10090 GN=Dock1 PE=1 SV=3
Q92608	Dedicator of cytokinesis protein 2 OS=Homo sapiens OX=9606 GN=DOCK2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001194 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16172 all species →	DOCK_N	DOCK N-terminus	Family	Interproscan
PF14429 all species →	DOCK-C2	C2 domain in Dock180 and Zizimin proteins	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR026791 all species →	Family	Dedicator of cytokinesis	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR042455 all species →	Homologous_superfamily	Dedicator of cytokinesis, N-terminal, subdomain 1	Interproscan
IPR032376 all species →	Domain	Dedicator of cytokinesis, N-terminal domain	Interproscan
IPR027007 all species →	Domain	C2 DOCK-type domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45653 all species →	DEDICATOR OF CYTOKINESIS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025411-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_025411-T1 global co-expression network