Gene detail

Detailed information of OS493_025417-T1 in Lophelia pertusa

Genomic Location: scaffold_125:267838...273781
NR annotation: KAJ7356308.1, hypothetical protein OS493_025417 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q20591	V-type proton ATPase subunit e OS=Caenorhabditis elegans OX=6239 GN=vha-17 PE=1 SV=2
Q8NHE4	V-type proton ATPase subunit e 2 OS=Homo sapiens OX=9606 GN=ATP6V0E2 PE=1 SV=1
Q91XE7	V-type proton ATPase subunit e 2 OS=Mus musculus OX=10090 GN=Atp6v0e2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011218 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05493 all species →	ATP_synt_H	ATP synthase subunit H	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008389 all species →	Family	ATPase, V0 complex, subunit e1/e2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12263 all species →	VACUOLAR ATP SYNTHASE SUBUNIT H	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0033179 all species →	Cellular Component	proton-transporting V-type ATPase, V0 domain	Interproscan
GO:0046961 all species →	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02153	ATPeV0E, ATP6H; V-type H+-transporting ATPase subunit e	-	Rheumatoid arthritis	ko05323	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025417-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

169.4Max TPM

84.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	79.53	111.29
polyp at pH7 6	18	18	81.78	100.53
coral polyp · control treatment	16	16	95.97	127.98
coral polyp · oil and dispersant treatment	16	16	103.64	169.36
coral polyp · oil treatment	16	16	89.92	125.79
coral polyp · dispersant treatment	16	16	60.33	84.87
Polyp	10	10	78.98	145.80

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	111.29
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	102.57
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	97.16
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	95.83
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	92.93
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	83.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.31
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.37
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.74
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.96
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.69
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.41
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.96
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.23
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.57
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	100.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	99.64
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	98.58
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	98.36
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	97.90
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	95.76
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.13
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	85.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.28
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.07
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.58
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.02
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.34
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.49
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.72
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.31
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.78
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	127.98
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	119.07
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	117.40
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	111.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.94
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.87
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.46
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.03
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	98.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	91.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.44
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.13
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.97
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.22
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	169.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.94
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	123.67
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	121.55
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.49
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	117.99
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	116.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	113.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	104.50
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.94
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.72
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.05
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.40
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.30
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.16
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	125.79
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	120.05
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	119.37
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	110.70
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	106.91
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	99.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	97.08
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.55
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.46
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.15
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.01
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.53
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.32
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.87
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.84
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.91
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.38
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.33
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.53
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.64
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.16
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.84
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	145.80
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	88.47
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	85.30
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	79.78
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	78.91
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	78.76
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	70.07
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	68.40
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	51.22
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	43.06

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.