Detailed information of OS493_025426-T1 in Lophelia pertusa

Genomic Location: scaffold_125:386689...391048
NR annotation: KAJ7356317.1, snoRNP complex protein nop56 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9D6Z1Nucleolar protein 56 OS=Mus musculus OX=10090 GN=Nop56 PE=1 SV=2
O00567Nucleolar protein 56 OS=Homo sapiens OX=9606 GN=NOP56 PE=1 SV=4
Q5RA29Nucleolar protein 56 OS=Pongo abelii OX=9601 GN=NOP56 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002002 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01798
all species →		NopsnoRNA binding domain, fibrillarinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002687
all species →		DomainNop domainInterproscan
IPR042239
all species →		Homologous_superfamilyNop, C-terminal domainInterproscan
IPR036070
all species →		Homologous_superfamilyNop domain superfamilyInterproscan
IPR045056
all species →		FamilyNucleolar protein Nop56/Nop58Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10894
all species →		NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0030515
all species →		Molecular FunctionsnoRNA bindingInterproscan
GO:0031428
all species →		Cellular Componentbox C/D methylation guide snoRNP complexInterproscan
GO:0032040
all species →		Cellular Componentsmall-subunit processomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_025426-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_025426-T1 global co-expression network
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