Gene detail

Detailed information of OS493_025427-T1 in Lophelia pertusa

Genomic Location: scaffold_125:392426...401038
NR annotation: KAJ7356318.1, Fumarylacetoacetate hydrolase domain-containing protein 2A [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GLT8	Oxaloacetate tautomerase fahd2, mitochondrial OS=Xenopus laevis OX=8355 GN=fahd2 PE=2 SV=1
F1MLX0	Oxaloacetate tautomerase FAHD2A, mitochondrial OS=Bos taurus OX=9913 GN=FAHD2A PE=1 SV=3
Q2KIB0	Oxaloacetate tautomerase FAHD2B, mitochondrial OS=Bos taurus OX=9913 GN=FAHD2B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001377 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01557 all species →	FAA_hydrolase	Fumarylacetoacetate (FAA) hydrolase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036663 all species →	Homologous_superfamily	Fumarylacetoacetase-like, C-terminal domain superfamily	Interproscan
IPR051121 all species →	Family	Fumarylacetoacetate Hydrolase (FAH)	Interproscan
IPR011234 all species →	Domain	Fumarylacetoacetase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42796 all species →	FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025427-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025427-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

24.9Max TPM

13.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.29	24.73
polyp at pH7 6	18	18	15.37	24.85
coral polyp · control treatment	16	16	12.82	22.57
coral polyp · oil and dispersant treatment	16	16	10.38	21.85
coral polyp · oil treatment	16	16	12.85	23.85
coral polyp · dispersant treatment	16	16	12.43	20.21
Polyp	10	10	11.21	18.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.73
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.58
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.78
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.04
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.10
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.85
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.85
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.66
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.58
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.56
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.14
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.15
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.85
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.51
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.43
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.77
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.39
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.17
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.28
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.39
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.22
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.67
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.80
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.62
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.54
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.43
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.74
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.33
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.38
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.57
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.51
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.25
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.28
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.59
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.06
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.50
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.14
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.02
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.50
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.30
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.81
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.29
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.77
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.85
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.98
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.75
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.34
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.60
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.49
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.59
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.38
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.80
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.73
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.95
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.75
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.57
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.27
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.01
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.69
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.84
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.14
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.96
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.63
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.25
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.24
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.21
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.13
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.60
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.46
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.74
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.83
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.10
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.64
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.47
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.15
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.41
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.81
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.93
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.02
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.96
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.37
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.98
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.64
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.83
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.56

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.