Gene detail

Detailed information of OS493_025428-T1 in Lophelia pertusa

Genomic Location: scaffold_125:417226...432909
NR annotation: KAJ7356319.1, manganese ion binding [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q27245	Putative aminopeptidase W07G4.4 OS=Caenorhabditis elegans OX=6239 GN=lap-2 PE=3 SV=1
P38019	Probable cytosol aminopeptidase OS=Chlamydia muridarum (strain MoPn / Nigg) OX=243161 GN=pepA PE=3 SV=2
B0B9F3	Probable cytosol aminopeptidase OS=Chlamydia trachomatis serovar L2 (strain ATCC VR-902B / DSM 19102 / 434/Bu) OX=471472 GN=pepA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002508 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00883 all species →	Peptidase_M17	Cytosol aminopeptidase family, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011356 all species →	Family	Peptidase M17, leucine aminopeptidase/peptidase B	Interproscan
IPR000819 all species →	Domain	Peptidase M17, leucyl aminopeptidase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11963 all species →	LEUCINE AMINOPEPTIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019538 all species →	Biological Process	protein metabolic process	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0070006 all species →	Molecular Function	metalloaminopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01255	CARP, pepA; leucyl aminopeptidase	EC:3.4.11.1	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025428-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

2,158.8Max TPM

908.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	819.04	1,196.13
polyp at pH7 6	18	18	758.35	1,046.49
coral polyp · control treatment	16	16	1,266.26	2,158.75
coral polyp · oil and dispersant treatment	16	16	844.62	2,042.41
coral polyp · oil treatment	16	16	1,060.31	1,942.75
coral polyp · dispersant treatment	16	16	886.67	1,562.51
Polyp	10	10	664.58	1,233.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,196.13
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,193.79
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,082.47
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,080.37
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	839.98
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	818.73
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	799.86
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	788.92
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	762.89
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	755.84
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	752.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	746.60
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	716.72
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	711.80
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	692.88
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	673.84
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	570.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	558.93
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,046.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,038.22
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,026.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,025.28
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	949.19
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	947.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	946.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	945.48
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	752.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	752.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	695.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	692.87
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	636.69
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	621.88
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	438.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	434.89
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	349.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	348.46
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,158.75
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,114.68
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,020.51
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,750.62
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,734.03
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,594.23
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,503.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,189.79
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,138.61
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,089.41
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,037.93
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	734.89
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	718.50
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	655.32
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	522.32
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	296.96
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,042.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,657.79
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,241.28
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,032.24
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,011.08
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	997.58
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	914.70
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	738.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	702.55
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	672.44
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	626.51
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	575.04
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	389.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	349.07
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	334.50
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	227.85
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,942.75
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,771.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,746.04
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,521.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,495.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,327.18
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,324.75
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	989.32
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	722.28
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	714.49
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	688.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	638.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	596.91
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	581.38
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	499.31
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	404.37
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,562.51
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,146.96
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,085.69
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,074.28
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,020.23
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	980.46
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	937.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	930.63
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	892.68
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	864.81
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	850.27
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	759.95
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	676.50
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	639.44
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	475.84
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	289.17
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1,233.47
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1,128.15
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	945.72
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	927.66
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	714.08
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	587.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	395.93
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	386.79
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	175.60
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	151.19

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.