Gene detail

Detailed information of OS493_025430-T1 in Lophelia pertusa

Genomic Location: scaffold_125:456839...458666
NR annotation: KAJ7356321.1, hypothetical protein OS493_025430 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8AVJ1	Proline-rich protein 5 OS=Xenopus laevis OX=8355 GN=prr5 PE=2 SV=1
P85299	Proline-rich protein 5 OS=Homo sapiens OX=9606 GN=PRR5 PE=1 SV=1
Q5E9R0	Proline-rich protein 5-like OS=Bos taurus OX=9913 GN=PRR5L PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004995 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08539 all species →	HbrB	HbrB-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR013745 all species →	Family	TORC2 component Bit61/PRR5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32428 all species →	TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT BIT61-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031932 all species →	Cellular Component	TORC2 complex	Interproscan
GO:0038203 all species →	Biological Process	TORC2 signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025430-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025430-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

10.7Max TPM

4.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.93	8.56
polyp at pH7 6	18	17	4.57	7.92
coral polyp · control treatment	16	16	6.39	10.69
coral polyp · oil and dispersant treatment	16	16	5.21	8.11
coral polyp · oil treatment	16	16	6.08	10.57
coral polyp · dispersant treatment	16	15	3.64	6.79
Polyp	10	9	2.97	4.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.88
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.82
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.21
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.76
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.43
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.38
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.10
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.96
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.92
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.80
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.68
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.19
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.23
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.98
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.81
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.78
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.38
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.93
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.57
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.35
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.23
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.69
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.58
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.91
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.77
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.90
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.62
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.76
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.42
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.84
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.60
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.43
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.11
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.29
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.16
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.70
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.52
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.23
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.13
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.06
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.72
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.43
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.19
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.77
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.69
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.57
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.28
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.78
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.74
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.70
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.86
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.48
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.89
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.88
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.65
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.30
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.99
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.54
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.42
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.79
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.86
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.07
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.05
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.04
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.65
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.57
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.46
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.44
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.37
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.11
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.83
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.99
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.47
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.94
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.40
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.18
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.52
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.