Gene detail

Detailed information of OS493_025453-T1 in Lophelia pertusa

Genomic Location: scaffold_125:682467...692816
NR annotation: KAJ7356344.1, phosphopyruvate hydratase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08BC6	Enolase 4 OS=Danio rerio OX=7955 GN=eno4 PE=2 SV=1
Q8C042	Enolase 4 OS=Mus musculus OX=10090 GN=Eno4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003325 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_025453-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR029017 all species →	Homologous_superfamily	Enolase-like, N-terminal	Interproscan
IPR020811 all species →	Domain	Enolase, N-terminal	Interproscan
IPR000941 all species →	Family	Enolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11902 all species →	ENOLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000015 all species →	Cellular Component	phosphopyruvate hydratase complex	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0004634 all species →	Molecular Function	phosphopyruvate hydratase activity	Interproscan
GO:0006096 all species →	Biological Process	glycolytic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025453-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025453-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

103TPM > 0

7Conditions

34.7Max TPM

5.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	3.21	6.12
polyp at pH7 6	18	13	1.54	3.06
coral polyp · control treatment	16	16	11.10	34.74
coral polyp · oil and dispersant treatment	16	16	7.67	29.04
coral polyp · oil treatment	16	16	7.72	21.39
coral polyp · dispersant treatment	16	16	6.55	12.24
Polyp	10	10	3.84	10.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.88
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.93
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.30
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.27
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.81
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.29
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.16
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.13
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.49
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.47
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.46
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.22
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.06
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.94
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.56
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.50
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.74
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.12
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.29
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.71
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.37
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.56
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.05
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.53
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.70
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.02
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.89
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.81
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.04
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.13
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.85
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.15
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.24
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.54
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.01
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.38
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.91
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.39
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.70
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.37
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.20
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.73
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.91
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.04
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.22
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.60
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.01
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.71
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.61
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.24
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.28
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.26
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.42
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.91
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.83
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.68
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.30
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.78
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.64
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.52
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.67
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.47
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.55
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.29
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.33
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.16
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.66
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.42
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.78

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.