Gene detail

Detailed information of OS493_025513-T1 in Lophelia pertusa

Genomic Location: scaffold_126:136006...148050
NR annotation: KAJ7328113.1, hypothetical protein OS493_025513 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q27312	ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Aplysia kurodai OX=6501 PE=1 SV=1
P29241	ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Aplysia californica OX=6500 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001254 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02267 all species →	Rib_hydrolayse	ADP-ribosyl cyclase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003193 all species →	Family	ADP-ribosyl cyclase (CD38/157)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10912 all species →	ADP-RIBOSYL CYCLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003953 all species →	Molecular Function	NAD+ nucleosidase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016849 all species →	Molecular Function	phosphorus-oxygen lyase activity	Interproscan
GO:0030890 all species →	Biological Process	positive regulation of B cell proliferation	Interproscan
GO:0061809 all species →	Molecular Function	NAD+ nucleotidase, cyclic ADP-ribose generating	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18152	BST1, CD157; ADP-ribosyl cyclase 2	EC:3.2.2.6 EC:2.4.99.20	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025513-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

42.0Max TPM

7.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.99	7.68
polyp at pH7 6	18	15	4.70	15.15
coral polyp · control treatment	16	16	7.78	33.01
coral polyp · oil and dispersant treatment	16	15	8.97	22.60
coral polyp · oil treatment	16	16	7.99	21.84
coral polyp · dispersant treatment	16	16	8.75	25.24
Polyp	10	10	14.73	41.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.68
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.27
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.99
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.42
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.61
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.97
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.07
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.01
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.72
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.15
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.42
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.39
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.52
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.51
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.26
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.30
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.69
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.82
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.01
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.28
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.57
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.73
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.83
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.59
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.90
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.24
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.42
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.81
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.03
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.60
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.81
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.10
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.91
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.81
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.61
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.53
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.03
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.03
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.02
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.20
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.45
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.96
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.95
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.84
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.85
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.27
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.32
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.48
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.43
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.02
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.90
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.55
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.03
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.24
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.39
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.56
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.13
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.64
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.20
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.80
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.25
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.83
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.46
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.48
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.57
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.48
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	41.97
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	29.81
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	23.57
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	21.66
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.18
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.89
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.22
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.14
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.07

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.