Gene detail

Detailed information of OS493_025542-T1 in Lophelia pertusa

Genomic Location: scaffold_126:645414...650509
NR annotation: KAJ7328138.1, Major facilitator super domain-containing protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H3U5	Lysosomal dipeptide transporter MFSD1 OS=Homo sapiens OX=9606 GN=MFSD1 PE=1 SV=2
Q1JQC1	Lysosomal dipeptide transporter MFSD1 OS=Bos taurus OX=9913 GN=MFSD1 PE=2 SV=1
Q9DC37	Lysosomal dipeptide transporter MFSD1 OS=Mus musculus OX=10090 GN=Mfsd1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001483 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR052187 all species →	Family	Major facilitator superfamily domain-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23512 all species →	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025542-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025542-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

36.0Max TPM

12.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	7.53	13.25
polyp at pH7 6	18	16	7.41	12.16
coral polyp · control treatment	16	16	16.41	26.98
coral polyp · oil and dispersant treatment	16	16	19.48	36.04
coral polyp · oil treatment	16	16	14.05	23.49
coral polyp · dispersant treatment	16	15	15.97	24.63
Polyp	10	9	3.99	8.23

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.25
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.89
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.85
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.80
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.48
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.11
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.82
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.40
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.50
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.59
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.50
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.48
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.67
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.16
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.32
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.46
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.44
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.75
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.74
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.28
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.77
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.49
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.98
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.10
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.30
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.50
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.91
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.85
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.91
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.86
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.39
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.41
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.07
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.50
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.70
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.64
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.49
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.03
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.30
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.21
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.11
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.69
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.28
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.95
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.49
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.60
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.62
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.26
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.29
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.63
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.11
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.57
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.71
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.29
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.39
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.63
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.75
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.35
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.85
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.64
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.07
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.58
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.90
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.02
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.29
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.23
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.47
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.04
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.93
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.76
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.58
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.01
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.06
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.