Gene detail

Detailed information of OS493_025572-T1 in Lophelia pertusa

Genomic Location: scaffold_126:1026739...1035641
NR annotation: KAJ7328159.1, hypothetical protein OS493_025572 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0CB05	Centrosomal protein of 63 kDa OS=Gallus gallus OX=9031 GN=CEP63 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003667 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17045 all species →	CEP63	Centrosomal protein of 63 kDa	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031470 all species →	Domain	Centrosomal protein Cep63/Deup1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18875 all species →	SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007099 all species →	Biological Process	centriole replication	Interproscan
GO:0098535 all species →	Biological Process	de novo centriole assembly involved in multi-ciliated epithelial cell differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025572-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025572-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

21.0Max TPM

8.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.49	17.48
polyp at pH7 6	18	18	9.95	18.43
coral polyp · control treatment	16	16	9.94	21.02
coral polyp · oil and dispersant treatment	16	16	6.43	15.20
coral polyp · oil treatment	16	16	7.86	11.83
coral polyp · dispersant treatment	16	16	6.55	11.61
Polyp	10	9	5.23	12.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.48
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.76
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.43
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.22
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.13
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.84
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.41
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.37
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.66
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.43
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.36
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.18
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.14
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.99
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.43
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.96
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.23
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.63
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.97
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.91
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.23
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.86
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.53
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.50
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.93
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.66
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.35
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.01
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.82
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.29
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.02
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.28
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.94
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.83
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.37
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.74
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.90
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.42
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.64
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.15
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.20
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.87
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.77
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.73
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.02
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.32
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.92
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.91
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.42
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.18
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.42
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.84
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.59
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.03
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.64
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.62
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.46
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.29
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.91
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.89
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.61
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.82
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.08
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.85
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.58
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.96
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.94
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.28
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.03
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.46
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.38
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.96
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.14
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.37
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.67
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.89
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.92
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.