Gene detail

Detailed information of OS493_025577-T1 in Lophelia pertusa

Genomic Location: scaffold_126:1117469...1121102
NR annotation: KAJ7328163.1, Friend leukemia integration 1 transcription factor [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P81270	Transcriptional regulator ERG OS=Mus musculus OX=10090 GN=Erg PE=1 SV=2
Q90837	Transcriptional regulator Erg OS=Gallus gallus OX=9031 GN=ERG PE=2 SV=1
P11308	Transcriptional regulator ERG OS=Homo sapiens OX=9606 GN=ERG PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004369 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00178 all species →	Ets	Ets-domain	Domain	Interproscan
PF02198 all species →	SAM_PNT	Sterile alpha motif (SAM)/Pointed domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003118 all species →	Domain	Pointed domain	Interproscan
IPR000418 all species →	Domain	Ets domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR046328 all species →	Family	ETS family	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11849 all species →	ETS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025577-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025577-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

9,610.9Max TPM

1,436.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	369.52	718.72
polyp at pH7 6	18	18	542.62	936.38
coral polyp · control treatment	16	16	880.77	1,420.62
coral polyp · oil and dispersant treatment	16	16	1,331.79	2,537.71
coral polyp · oil treatment	16	16	1,045.54	1,782.00
coral polyp · dispersant treatment	16	16	5,323.00	9,610.86
Polyp	10	10	432.46	794.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	718.72
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	715.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	551.03
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	550.40
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	409.50
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	406.11
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	354.13
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	352.52
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	351.25
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	342.57
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	293.44
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	284.04
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	251.63
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	248.60
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	227.91
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	227.38
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	186.34
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	180.19
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	936.38
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	916.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	815.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	808.06
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	703.44
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	696.88
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	688.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	686.97
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	470.89
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	464.62
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	445.85
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	441.32
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	301.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	300.39
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	288.47
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	287.36
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	262.53
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	252.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,420.62
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,363.33
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,274.35
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,251.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,238.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,051.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	925.31
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	836.21
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	779.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	728.38
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	641.60
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	599.78
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	563.86
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	526.77
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	474.69
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	415.98
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,537.71
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,462.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,912.64
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,718.52
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,520.23
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,390.88
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,382.86
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,205.13
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,190.15
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,163.99
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	977.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	910.89
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	898.56
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	840.82
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	750.37
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	445.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,782.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,533.42
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,431.70
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,361.25
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,267.96
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,202.76
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,122.38
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	991.07
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	949.91
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	892.89
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	817.42
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	809.27
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	723.72
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	688.95
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	592.88
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	561.09
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9,610.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7,703.26
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7,304.81
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7,297.79
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7,118.91
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6,563.59
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6,268.96
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5,946.74
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5,581.12
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4,281.27
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,955.02
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,888.54
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,070.00
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,917.69
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,657.87
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,001.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	794.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	707.12
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	673.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	485.46
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	333.26
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	310.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	275.13
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	265.99
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	265.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	213.37

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.