Gene detail

Detailed information of OS493_025583-T1 in Lophelia pertusa

Genomic Location: scaffold_127:102555...107264
NR annotation: KAJ7390332.1, LRP2 binding protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6IND7	LRP2-binding protein OS=Xenopus laevis OX=8355 GN=lrp2bp PE=2 SV=1
A5PLI4	LRP2-binding protein OS=Danio rerio OX=7955 GN=lrp2bp PE=2 SV=1
Q569C2	LRP2-binding protein OS=Rattus norvegicus OX=10116 GN=Lrp2bp PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006157 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08238 all species →	Sel1	Sel1 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR006597 all species →	Repeat	Sel1-like repeat	Interproscan
IPR052323 all species →	Family	LRP2-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44554 all species →	LRP2-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07126	K07126; uncharacterized protein	-	Function unknown	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025583-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

71.4Max TPM

22.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	24.48	52.46
polyp at pH7 6	18	18	24.96	43.37
coral polyp · control treatment	16	16	25.90	61.26
coral polyp · oil and dispersant treatment	16	16	18.82	50.55
coral polyp · oil treatment	16	16	23.82	71.40
coral polyp · dispersant treatment	16	16	14.78	39.38
Polyp	10	10	23.27	67.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.46
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.83
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.33
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.23
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.41
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.37
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.72
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.89
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.78
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.76
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.23
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.23
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.42
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.37
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.68
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.20
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.25
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.51
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.98
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.27
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.02
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.83
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.93
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.10
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.65
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.34
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.26
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.79
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.29
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.35
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.63
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.70
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.40
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.14
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.64
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.86
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.64
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.55
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.54
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.84
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.62
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.97
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.43
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.92
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.76
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.10
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.25
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.83
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.69
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.24
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.01
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.83
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.76
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.52
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.91
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.87
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.06
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.93
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.52
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.26
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.40
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.33
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.38
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.52
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.63
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.66
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.67
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.75
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.76
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.78
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.42
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	67.37
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	52.77
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	28.18
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	17.43
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.42
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.01
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.78
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.15
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.12

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.