Gene detail

Detailed information of OS493_025611-T1 in Lophelia pertusa

Genomic Location: scaffold_127:511843...514422
NR annotation: KAJ7390360.1, Ectonucleoside triphosphate diphosphohydrolase 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DBT4	Ectonucleoside triphosphate diphosphohydrolase 4 OS=Mus musculus OX=10090 GN=Entpd4 PE=1 SV=1
Q9Y227	Ectonucleoside triphosphate diphosphohydrolase 4 OS=Homo sapiens OX=9606 GN=ENTPD4 PE=1 SV=1
Q28CF8	Ectonucleoside triphosphate diphosphohydrolase 7 OS=Xenopus tropicalis OX=8364 GN=entpd7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006584 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01150 all species →	GDA1_CD39	GDA1/CD39 (nucleoside phosphatase) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000407 all species →	Family	Nucleoside phosphatase GDA1/CD39	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11782 all species →	ADENOSINE/GUANOSINE DIPHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004382 all species →	Molecular Function	GDP phosphatase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006256 all species →	Biological Process	UDP catabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0045134 all species →	Molecular Function	UDP phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025611-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025611-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

69.0Max TPM

16.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.20	25.54
polyp at pH7 6	18	18	20.46	32.30
coral polyp · control treatment	16	16	15.73	29.70
coral polyp · oil and dispersant treatment	16	16	14.48	23.75
coral polyp · oil treatment	16	16	14.17	31.24
coral polyp · dispersant treatment	16	16	7.66	18.73
Polyp	10	10	32.28	68.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.54
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.24
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.22
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.15
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.49
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.17
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.47
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.53
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.66
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.07
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.16
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.03
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.11
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.97
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.30
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.83
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.43
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.83
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.03
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.96
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.77
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.12
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.86
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.35
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.22
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.24
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.24
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.88
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.70
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.70
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.49
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.74
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.47
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.87
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.93
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.33
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.49
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.15
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.13
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.08
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.89
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.81
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.44
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.75
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.24
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.34
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.87
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.36
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.82
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.11
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.59
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.30
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.67
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.96
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.02
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.66
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.96
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.94
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.73
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.28
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.29
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.95
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.47
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.13
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.02
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.47
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.30
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.30
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.09
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.78
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.46
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.92
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	68.97
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	60.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	41.45
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	36.20
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	29.24
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.74
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.64
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	16.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.98

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.