Gene detail

Detailed information of OS493_025634-T1 in Lophelia pertusa

Genomic Location: scaffold_127:667696...672153
NR annotation: KAJ7390382.1, M-phase inducer phosphatase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7MBD1	M-phase inducer phosphatase 1 OS=Bos taurus OX=9913 GN=CDC25A PE=2 SV=1
P48964	M-phase inducer phosphatase 1 OS=Mus musculus OX=10090 GN=Cdc25a PE=2 SV=2
P30304	M-phase inducer phosphatase 1 OS=Homo sapiens OX=9606 GN=CDC25A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006452 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00581 all species →	Rhodanese	Rhodanese-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036873 all species →	Homologous_superfamily	Rhodanese-like domain superfamily	Interproscan
IPR001763 all species →	Domain	Rhodanese-like domain	Interproscan
IPR000751 all species →	Family	M-phase inducer phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10828 all species →	M-PHASE INDUCER PHOSPHATASE DUAL SPECIFICITY PHOSPHATASE CDC25	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:1902751 all species →	Biological Process	positive regulation of cell cycle G2/M phase transition	Interproscan
GO:0000086 all species →	Biological Process	G2/M transition of mitotic cell cycle	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010971 all species →	Biological Process	positive regulation of G2/M transition of mitotic cell cycle	Interproscan
GO:0110032 all species →	Biological Process	positive regulation of G2/MI transition of meiotic cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025634-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025634-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

36.8Max TPM

10.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.49	15.98
polyp at pH7 6	18	18	9.42	16.97
coral polyp · control treatment	16	16	14.67	36.84
coral polyp · oil and dispersant treatment	16	16	7.85	20.66
coral polyp · oil treatment	16	16	13.69	31.23
coral polyp · dispersant treatment	16	16	10.86	21.24
Polyp	10	10	7.99	19.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.98
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.96
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.83
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.69
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.74
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.59
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.51
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.96
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.24
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.06
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.64
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.97
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.82
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.59
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.36
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.97
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.03
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.72
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.07
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.89
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.01
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.56
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.77
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.70
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.64
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.60
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.73
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.45
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.83
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.24
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.56
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.53
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.15
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.49
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.33
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.02
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.43
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.69
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.19
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.23
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.28
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.37
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.04
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.90
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.66
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.85
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.28
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.93
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.94
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.63
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.48
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.93
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.77
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.41
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.16
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.15
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.23
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.95
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.76
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.86
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.86
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.54
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.49
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.23
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.03
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.57
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.68
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.18
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.65
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.93
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.46
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.24
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.48
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.61
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.49
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.39
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.50
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.63
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.73
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.05
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.17
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.67
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.57
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.03
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.98
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.03
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.81
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.55
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.46
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.79
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.72
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.19
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.67

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.