Gene detail

Detailed information of OS493_025653-T1 in Lophelia pertusa

Genomic Location: scaffold_127:818332...868429
NR annotation: KAJ7390397.1, hypothetical protein OS493_025653 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_025653-T1

ATGGTTTATACTATGGCTGAAATAAAATCAGGACCTTTATCACCAAAGAAGCCGGTCAAAGAGAAAATCGTTGGAATCTATGATGATTTCTTTAAGGGAGATGATCCATCTCGTGAAAGTCCAAATTTCTGGCATGAATTTTTTCTCATGAGGGTCAATGCTGTGTACTTGGAACAGTGTATTGATAAGCTCAGTGAAGAAGAACTTATGGATGTTAAGGAAAACCTCAACCTTCTGTTTTCTCAATGCTGTATTGCTTTGCGAGGAGATCACCAAATAAAACTAGTCAATGCTCTGCAGACGCTGTGTGCAATAGTCCGGGCGGTTTACAGAAAGAGATTAGGGGACCATGGGTTTGACATCATTAACATTTTGATTGGTTTTGATGCTGCCGAAGCACAAATGCAGGGATTGTTAGAAAGTTTGCACACATTTCTAGTTGGGGACTATCCAGTGAGCTTAAAGAACCTGTCACTTAAGCTGACTCTAATCCTTGTTACAGCAACTGACAATGTCAGTCAAAACACGATAGTGGAATATATCATGATTAACAGCATTTTTGAAGCTGTCATTCAGGTTCTCGCTGATCCAGTGGCCAGACAGCAACATGGCTATGAAGCAATGCTGCTTTTGACAATTCTGGTTAATTACAGAAAGTATGAAGCATCAAATCCTTATATTGGAAAGCTGTCAATCTTGGATGATGAATTGGCACTAAATGGTTTTGGCTGTGTAATATCAGCTGCGCTTACTGATTACAACAGGAAACATGCAGCCATGCTAGAACAGGCATCTGGAGGATTGATCAGTTCCATCACAAGCTTTGTTGGAAGCATGTTTGTTGCTGAGACAGAGAGAGCAGAATGTTTCAGTACCAACGAGGCTGTCCTTCTGGCGTTATATGAAGCAGTGCACCTAAACAGAAATTTCTTTACTGTCCTTAGTCATGTTACGACTGCCCCAGGGTCCAGTCCTCCTCCTTCACCTACAGCCGCTCCTCCGGTTGTTGAGAGGACTGCAACTGCTGCCGTTGTTGAAGATTTTCCTCCTGACTTGAGTCAGCCCACTAATTTACTGGTCACTCTATTGACGTATTCTTCCATTGCTCTTCAGAATACTAAAGATGACAAAGGTATAAGCAATGCCAAGCTGTGTCAGATCATTTTGACATGTATTGTTGAGGATCAATACGCGAATGTTTTTCTTCATGATGCTAACATGACGTTCTCAGTGCCTCTACATAGAGCGCAAATGTATCACAGAGGTGCTGTCATTGAAAAGAATGCTCCTTCAAGGCCTCTCGCTTGTGCGTTACTAGATCTTATGGTGGAGTTTATTGTAACTCACATGATGAAAACTTTACAAACTGACTTATACAGTAAAACATTTGGAATACTCCATCGCATGCTGTGTTATCAAAAGAGATGCCGCGTCAGGCTGTCTTACTCATGGAAGAGTTTCTGGACTGCTCTTATGAACTTCCTTAAGTTCCTTCTCTCCAATGAAACTCTGCTCACAAAGACCTGCGATATCTTCACCCTGGCATCACAGGTGGTTAACATCTTTAATTTGTTTATCACGTATGGAGACACATTTCTACCTTCTCCCACGTCATATGACGAACTGTATTACGAAATCATACGAGTGCATCAGATTTTCGACAACCTGTATTCAATGGCATTAAGACATTCAACAAATGGTGGCGACTGGAAGGATGCTGCATCTCGTCTCGCCAGTTCTTTAGTGAATGTCAGAGCAATCATAAACCATTTCACGCCGAAAATTGATTCATGGGCTGCTGTCAATCATCTGACGTCAATGTCTTCGGAAACAGGTATTGAGCGTGATTCGCAGAAAAGAGGCGGCCAACGGTTCGCGAAATGGACACGAAGTCAGGAATTAGCTGATAAAGAGAACCAAGGCATCCCAGAAAACTGGCAAAATGGGGAGCCGCCAAGAGTCGTCTCGATATTGAAGTCTTCGCAGAAAGGAAACTGCCCCTTCGAAAAGAAATTGGCCAAAGTCTCCTTCAAAAATTCTCCTGTGCGTCACACAATTCCTAGTTACAGCGACGCTGAAGTACGCGTTGATTGGGAGGAGATTCGTAAACTTGACGAAGAACAAAATTGGACAGAGAGAACACAAGTTGTGACCAAGGAAGATCACAAGCTAAACATCGACGCAGCAAAAGAGTTGCTTGACAAACTTATAACTGATTTGCCCTGTTTTAGGGAGCAATCAACTGCTACAAATATGACGACAAGTTCTGATGACCTCCCAGAGATAAATGTACCTGAGGTATCTCCTGGTGACGATATTGATATCAATGGTGATACTGCCGCGTATTTGGATGCGCCTGATGATGATCTAGAGACAGAGATTTTGTCTGACTTCTCAAAGTTGCAAATTAATAGTAATGACTGTCCACGGACCTTTTCACCCATTGGCAGTGAAAGGACATCACCTGAACAAGACAACTTAATGGATAGTAACGAAGACATAGACAAACTCCTGGCTTCACATGAAAATGACAACCTCGAAGATGATGATGATGTACTATCAACGGGAAACACGAGAACTGATAACTTGCTGAAGGAAATAACTAGCGAAGAGCACTGTTACAAGTCTGCCGAGCTGTTTTCTGTGAATCCCTCTGAACTCGAGAATGAGTTTCAAGAGAATGACACTTTAGAAGATCTACATGTAGTTAGCAGTGAAAAGACAGCGGAAGTCGAGGACTTGTTTGAACAGGACGCTGAAAATCAACAAGAGGATGACGATCAGTTTGGAGATGATGCATTTAAACCAGCAAGTGAAGCTATGTGGGAGCTTGATTATCTTGAGCAGTGTGGTAACAGCAATAAAGAATTTGAAATGTCAGCCCTGGCCCGTCAGTCTCTGTATGTTAAGTTTGATCCACTTGTCAAAGGGCCAAGTACTACTCAAAGCCCTGGAGTGAAAGGTAGCATGGGTGTGAGAGATATGGCACCACCAAAGCCGCTGAGCATGGGTGATAACCTTCTGTTGATGGATTCTCCCATGCCCCGTGGACGGTCCACAGTGCTGCCTGGACGCCGTACAAACAGGGACCATGCATTGTTAGAACAGGCCGACAGTCCATGTGGAGTGGATAAACTGCTGAATTTCACTCCTTCCAAATTAAACGAGGGGATGAAAACAGAATTTGAAAAAGACGAAGAGGATATTTTTGTGGAAGAGTCTGCTGACAACATTGTGGAAGAAACGCAGTCTGTGCCAGAAATAAGCAACATTGAGGTGAACGAGGAAGAACGGCCGCGCGGAAAGGCGCTGTTATACAGCAAAGAGGATTTAGATGCAGCTGTCAAGAGAGAGACGAAAGCTCTTCGTAAGCAGGCGCTGTTCTGTAGCAAGGAAGAGTTCGCCGCGGCAGTGAGGAATGAAACAGATGCTCTGCGTCAGCAGATGCAAGAGGAGGCTACAATTCGTGAAATGGAAAGCAAAGAACTGACGGACAGGAATCATCAACTAAAGAGGGAAACAGGAGAGTTAAGGGTCGTGATGCAAGAATACGAGAAGACCATCGCAGACATGATAGAAAAAAATCAGAAGTCCCAGGACCAGTATAATCACTCGACTTCAGAAGAAGCGAAGGAAAGAGACCAGCTGCAATCTGACTTGACCGCGGTAGAGACAGCCTTTTCAGACCTTCACAGAAGATACGAGAAGCTCAAAGGAGTAGTGGAGAATTTTAAAAAGAACGAAGAAATACTTAAAAAGGCAACAAACGACTACCAGGAGAAACTGAAAAGATCCGAGGAAAAATATCGCATGTTAAAGAAACACGCCGAAGAAAAAATAGAGAGTGCAAATATTGAGATCACTCGAGTACGGAAATCCATCGAGTCAGAGATAGCAGTAATGAAAGCGGCACTCAAGAAAGAGCAATCAAAGTCAGCCAGTTTAGAAATGAGTCTACAGCAGAAGATTACAGAAAATGCTGAACTTACAGCGATATGCGACGAGCTCATCAACAAAATGGGAGGTCCACGATCGTAA

Transcript

OS493_025653-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DCT2	Armadillo-like helical domain-containing protein 3 OS=Xenopus laevis OX=8355 GN=armh3 PE=2 SV=2
Q5T2E6	Armadillo-like helical domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ARMH3 PE=1 SV=1
Q6PD19	Armadillo-like helical domain-containing protein 3 OS=Mus musculus OX=10090 GN=Armh3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005711 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08427 all species →	ARMH3_C	Armadillo-like helical domain-containing protein 3, C-terminal	Domain	Interproscan
PF05010 all species →	TACC_C	Transforming acidic coiled-coil-containing protein (TACC), C-terminal	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013636 all species →	Domain	Armadillo-like helical domain-containing protein 3, C-terminal	Interproscan
IPR039868 all species →	Family	Armadillo-like helical domain-containing protein 3-like	Interproscan
IPR007707 all species →	Domain	Transforming acidic coiled-coil-containing protein, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13608 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025653-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_025653-T1 global co-expression network