Gene detail

Detailed information of OS493_025654-T1 in Lophelia pertusa

Genomic Location: scaffold_127:870767...877365
NR annotation: KAJ7390398.1, Dehydrogenase/reductase SDR member 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CXR1	Dehydrogenase/reductase SDR family member 7 OS=Mus musculus OX=10090 GN=Dhrs7 PE=1 SV=2
Q9Y394	Dehydrogenase/reductase SDR family member 7 OS=Homo sapiens OX=9606 GN=DHRS7 PE=1 SV=1
Q9Y140	Dehydrogenase/reductase SDR family protein 7-like OS=Drosophila melanogaster OX=7227 GN=CG7601 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000647 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR020904 all species →	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR053011 all species →	Family	Dehydrogenase/reductase SDR family member 7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44269 all species →	DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11165	DHRS7; dehydrogenase/reductase SDR family member 7	EC:1.1.-.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025654-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

25.0Max TPM

8.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.01	14.58
polyp at pH7 6	18	18	7.07	17.38
coral polyp · control treatment	16	16	10.04	20.01
coral polyp · oil and dispersant treatment	16	15	7.41	24.91
coral polyp · oil treatment	16	16	9.94	24.58
coral polyp · dispersant treatment	16	16	8.41	16.33
Polyp	10	9	8.92	24.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.58
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.65
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.50
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.74
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.46
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.19
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.30
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.77
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.71
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.45
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.99
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.89
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.38
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.28
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.20
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.74
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.58
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.63
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.07
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.65
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.64
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.93
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.62
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.10
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.93
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.31
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.90
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.01
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.37
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.69
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.60
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.15
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.47
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.74
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.85
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.84
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.91
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.53
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.60
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.58
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.37
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.85
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.55
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.52
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.17
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.93
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.95
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.54
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.58
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.98
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.35
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.91
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.75
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.43
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.34
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.01
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.71
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.39
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.93
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.23
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.16
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.79
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.33
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.43
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.19
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.72
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.62
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.47
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.07
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.01
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.41
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.89
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	24.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	15.57
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.59
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.47
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.85
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.51
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.22
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.