Gene detail

Detailed information of OS493_025695-T1 in Lophelia pertusa

Genomic Location: scaffold_128:296545...298715
NR annotation: KAJ7383823.1, hypothetical protein OS493_025695 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004141 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_025695-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR026123 all species →	Family	SCL-interrupting locus protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15128 all species →	TAL1 SCL INTERRUPTING LOCUS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0007224 all species →	Biological Process	smoothened signaling pathway	Interproscan
GO:0051298 all species →	Biological Process	centrosome duplication	Interproscan
GO:0071539 all species →	Biological Process	protein localization to centrosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025695-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025695-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

98TPM > 0

7Conditions

10.7Max TPM

2.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	2.73	8.28
polyp at pH7 6	18	11	1.93	5.56
coral polyp · control treatment	16	16	2.22	10.73
coral polyp · oil and dispersant treatment	16	16	2.33	5.37
coral polyp · oil treatment	16	16	2.29	5.29
coral polyp · dispersant treatment	16	15	2.83	10.44
Polyp	10	8	1.23	6.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.28
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.16
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.58
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.80
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.08
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.95
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.03
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.43
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.35
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.56
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.35
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.30
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.53
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.28
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.17
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.79
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.73
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.99
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.74
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.68
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.49
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.86
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.78
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.25
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.46
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.31
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.37
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.60
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.58
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.62
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.33
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.28
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.18
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.12
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.92
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.54
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.29
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.71
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.96
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.43
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.32
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.90
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.27
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.90
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.63
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.62
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.54
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.44
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.88
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.31
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.92
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.90
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.75
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.69
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.54
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.32
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.22
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.90
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.80
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.20
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.