Gene detail

Detailed information of OS493_025717-T1 in Lophelia pertusa

Genomic Location: scaffold_128:686665...698008
NR annotation: KAJ7383841.1, hypothetical protein OS493_025717 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91W43	Glycine dehydrogenase (decarboxylating), mitochondrial OS=Mus musculus OX=10090 GN=Gldc PE=1 SV=1
P23378	Glycine dehydrogenase (decarboxylating), mitochondrial OS=Homo sapiens OX=9606 GN=GLDC PE=1 SV=2
P15505	Glycine dehydrogenase (decarboxylating), mitochondrial OS=Gallus gallus OX=9031 GN=GLDC PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002709 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02347 all species →	GDC-P	Glycine cleavage system P-protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020581 all species →	Family	Glycine cleavage system P protein	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR049315 all species →	Domain	Glycine cleavage system P-protein, N-terminal domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11773 all species →	GLYCINE DEHYDROGENASE, DECARBOXYLATING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004375 all species →	Molecular Function	glycine dehydrogenase (decarboxylating) activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005960 all species →	Cellular Component	glycine cleavage complex	Interproscan
GO:0006546 all species →	Biological Process	glycine catabolic process	Interproscan
GO:0016594 all species →	Molecular Function	glycine binding	Interproscan
GO:0019464 all species →	Biological Process	glycine decarboxylation via glycine cleavage system	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025717-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025717-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

46.9Max TPM

15.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.75	20.53
polyp at pH7 6	18	18	10.56	18.47
coral polyp · control treatment	16	16	20.11	30.77
coral polyp · oil and dispersant treatment	16	16	16.59	30.06
coral polyp · oil treatment	16	16	16.08	31.24
coral polyp · dispersant treatment	16	15	23.25	46.88
Polyp	10	9	4.54	10.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.94
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.74
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.45
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.04
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.50
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.27
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.07
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.92
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.49
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.47
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.61
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.94
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.80
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.20
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.37
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.90
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.30
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.26
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.45
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.24
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.50
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.62
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.45
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.77
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.98
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.11
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.72
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.51
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.06
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.96
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.06
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.23
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.96
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.65
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.09
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.39
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.15
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.99
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.88
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.07
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.75
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.24
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.57
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.35
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.06
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.93
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.54
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.23
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.58
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.67
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.60
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.52
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.30
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.88
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.35
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.87
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.09
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.20
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.61
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.46
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.95
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.51
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.47
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.12
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.69
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.46
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.49
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.52
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.12
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.05
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.93
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.52
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.