Gene detail

Detailed information of OS493_025719-T1 in Lophelia pertusa

Genomic Location: scaffold_128:707126...707949
NR annotation: KAJ7383843.1, Mucolipin-3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R4F0	Mucolipin-3 OS=Mus musculus OX=10090 GN=Mcoln3 PE=1 SV=1
Q8TDD5	Mucolipin-3 OS=Homo sapiens OX=9606 GN=MCOLN3 PE=1 SV=1
F6RG56	Mucolipin-3 OS=Callithrix jacchus OX=9483 GN=MCOLN3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001720 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_025719-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR039031 all species →	Family	Mucolipin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12127 all species →	MUCOLIPIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0072345 all species →	Molecular Function	NAADP-sensitive calcium-release channel activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025719-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025719-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

214.1Max TPM

75.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	73.84	125.69
polyp at pH7 6	18	18	71.91	159.72
coral polyp · control treatment	16	16	85.06	136.78
coral polyp · oil and dispersant treatment	16	16	79.72	149.07
coral polyp · oil treatment	16	16	86.81	140.79
coral polyp · dispersant treatment	16	16	41.90	74.55
Polyp	10	10	94.78	214.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	125.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	124.70
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	124.67
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	111.01
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.07
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.68
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.50
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.41
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.64
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.46
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.62
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.06
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.51
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.73
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.52
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.76
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	159.72
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	158.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	101.77
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	96.13
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.34
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.55
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.14
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.80
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.51
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.74
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.12
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.67
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.11
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.53
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.43
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.84
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	136.78
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	132.76
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	119.14
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.66
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.98
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.47
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.95
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.30
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.37
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.63
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	149.07
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	142.20
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.42
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	105.81
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.56
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.83
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.46
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.75
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.79
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.23
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.14
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	140.79
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	133.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	130.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	120.76
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	103.31
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	91.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.66
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.21
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.09
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.41
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.71
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.96
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.75
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.04
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.55
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.96
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.65
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.43
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.75
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.62
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.46
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.12
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.65
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.29
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.06
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	214.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	134.60
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	132.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	106.20
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	95.43
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	79.57
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	59.06
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	50.66
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	43.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	32.06

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.