Gene detail

Detailed information of OS493_025742-T1 in Lophelia pertusa

Genomic Location: scaffold_128:1038636...1045148
NR annotation: KAJ7383866.1, hypothetical protein OS493_025742 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1LZA4	Glucosaminyl-phosphatidylinositol-acyltransferase PIGW OS=Bos taurus OX=9913 GN=PIGW PE=2 SV=1
Q7TSN4	Glucosaminyl-phosphatidylinositol-acyltransferase PIGW OS=Rattus norvegicus OX=10116 GN=Pigw PE=1 SV=1
Q8C398	Glucosaminyl-phosphatidylinositol-acyltransferase PIGW OS=Mus musculus OX=10090 GN=Pigw PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006818 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06423 all species →	GWT1	GWT1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009447 all species →	Family	Phosphatidylinositol anchor biosynthesis protein PIGW/GWT1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20661 all species →	PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS W PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006506 all species →	Biological Process	GPI anchor biosynthetic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0032216 all species →	Molecular Function	glucosaminyl-phosphatidylinositol O-acyltransferase activity	Interproscan
GO:0072659 all species →	Biological Process	protein localization to plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05283	PIGW; glucosaminylphosphatidylinositol acyltransferase	EC:2.3.-.-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025742-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

18.3Max TPM

5.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.79	7.72
polyp at pH7 6	18	18	5.69	9.76
coral polyp · control treatment	16	16	5.34	8.32
coral polyp · oil and dispersant treatment	16	16	4.51	8.62
coral polyp · oil treatment	16	16	5.88	9.86
coral polyp · dispersant treatment	16	16	3.65	8.82
Polyp	10	10	9.17	18.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.72
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.43
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.94
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.59
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.53
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.33
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.12
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.12
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.85
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.85
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.57
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.28
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.93
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.25
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.44
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.18
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.93
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.61
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.60
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.80
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.12
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.32
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.65
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.63
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.12
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.81
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.80
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.78
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.17
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.88
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.81
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.65
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.62
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.48
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.39
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.26
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.91
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.18
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.86
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.74
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.29
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.13
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.91
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.75
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.60
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.19
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.66
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.94
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.86
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.34
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.25
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.08
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.41
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.90
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.41
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.38
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.17
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.09
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.34
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.91
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.75
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.97
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.06
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.29
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.84
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.62
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.69
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.33
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.46
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.18
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.53
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.59
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.18

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.