Detailed information of OS493_025774-T1 in Lophelia pertusa

Genomic Location: scaffold_129:284792...290055
NR annotation: KAJ7377880.1, Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P53590Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial (Fragment) OS=Sus scrofa OX=9823 GN=SUCLG2 PE=1 SV=2
Q3MHX5Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Bos taurus OX=9913 GN=SUCLG2 PE=2 SV=1
Q96I99Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=SUCLG2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001643 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08442
all species →		ATP-grasp_2ATP-grasp domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013815
all species →		Homologous_superfamilyATP-grasp fold, subdomain 1Interproscan
IPR013650
all species →		DomainATP-grasp fold, succinyl-CoA synthetase-typeInterproscan
IPR005809
all species →		FamilySuccinate--CoA ligase-like, beta subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11815
all species →		SUCCINYL-COA SYNTHETASE BETA CHAINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0004776
all species →		Molecular Functionsuccinate-CoA ligase (GDP-forming) activityInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0006099
all species →		Biological Processtricarboxylic acid cycleInterproscan
GO:0006104
all species →		Biological Processsuccinyl-CoA metabolic processInterproscan
GO:0042709
all species →		Cellular Componentsuccinate-CoA ligase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_025774-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_025774-T1 global co-expression network
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