Gene detail

Detailed information of OS493_025780-T1 in Lophelia pertusa

Genomic Location: scaffold_129:374992...376132
NR annotation: KAJ7377886.1, b-cell receptor-associated protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51572	B-cell receptor-associated protein 31 OS=Homo sapiens OX=9606 GN=BCAP31 PE=1 SV=3
Q5R8H3	B-cell receptor-associated protein 31 OS=Pongo abelii OX=9601 GN=BCAP31 PE=2 SV=3
Q61335	B-cell receptor-associated protein 31 OS=Mus musculus OX=10090 GN=Bcap31 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007133 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05529 all species →	Bap31	Bap31/Bap29 transmembrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008417 all species →	Family	B-cell receptor-associated protein 29/31	Interproscan
IPR040463 all species →	Domain	BAP29/BAP31, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12701 all species →	BCR-ASSOCIATED PROTEIN, BAP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0070973 all species →	Biological Process	protein localization to endoplasmic reticulum exit site	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025780-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025780-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

162.4Max TPM

60.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	57.78	82.85
polyp at pH7 6	18	18	59.26	109.97
coral polyp · control treatment	16	16	68.28	120.03
coral polyp · oil and dispersant treatment	16	16	69.78	109.04
coral polyp · oil treatment	16	16	46.23	101.84
coral polyp · dispersant treatment	16	16	79.53	162.36
Polyp	10	10	30.04	48.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.85
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.74
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.36
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.96
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.38
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.83
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.32
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.73
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.70
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.49
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.68
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.31
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.66
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.67
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.20
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	109.97
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	96.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.72
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.61
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.24
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.14
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.63
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.83
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.48
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.01
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.37
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.48
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.21
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	120.03
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	112.82
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.81
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	98.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	97.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.06
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.47
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.27
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.13
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.05
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.53
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.31
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	109.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.07
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.06
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.22
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.12
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.53
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.99
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.01
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.35
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.30
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.42
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.25
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	101.84
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.96
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.62
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.37
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.34
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.27
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.46
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.23
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.57
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.15
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.15
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	162.36
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	114.89
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	114.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	105.40
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.34
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	98.37
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	96.27
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.74
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.13
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.38
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.05
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.07
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.12
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	48.81
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	47.92
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	47.54
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	36.24
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	29.86
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	23.77
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	21.98
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	21.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.47
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.37

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.