Detailed information of OS493_025804-T1 in Lophelia pertusa

Genomic Location: scaffold_129:623221...631237
NR annotation: KAJ7377910.1, ATP-dependent DNA helicase chl1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B8VIW9Fibronectin type III domain-containing protein OS=Acropora millepora OX=45264 PE=1 SV=1
Q90478Neural cell adhesion molecule L1.1 (Fragment) OS=Danio rerio OX=7955 GN=nadl1.1 PE=2 SV=1
Q4VA61Cell adhesion molecule DSCAML1 OS=Mus musculus OX=10090 GN=Dscaml1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000412 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00041
all species →		fn3Fibronectin type III domainDomainInterproscan
PF13882
all species →		Bravo_FIGEYBravo-like intracellular regionDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003961
all species →		DomainFibronectin type IIIInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR026966
all species →		DomainNeurofascin/L1/NrCAM, C-terminal domainInterproscan
IPR036116
all species →		Homologous_superfamilyFibronectin type III superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44170
all species →		PROTEIN SIDEKICKInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0007411
all species →		Biological Processaxon guidanceInterproscan
GO:0007420
all species →		Biological Processbrain developmentInterproscan
GO:0030424
all species →		Cellular ComponentaxonInterproscan
GO:0098609
all species →		Biological Processcell-cell adhesionInterproscan
GO:0098632
all species →		Molecular Functioncell-cell adhesion mediator activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_025804-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_025804-T1 global co-expression network
TOP