Gene detail

Detailed information of OS493_025821-T1 in Lophelia pertusa

Genomic Location: scaffold_129:1045158...1052063
NR annotation: KAJ7377926.1, dense core granule exocytosis [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GLR7	Calcium-dependent secretion activator 1 OS=Xenopus laevis OX=8355 GN=cadps PE=2 SV=1
Q9ULU8	Calcium-dependent secretion activator 1 OS=Homo sapiens OX=9606 GN=CADPS PE=1 SV=3
Q80TJ1	Calcium-dependent secretion activator 1 OS=Mus musculus OX=10090 GN=Cadps PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003049 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06292 all species →	MUN	MUN domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033227 all species →	Family	Calcium-dependent secretion activator	Interproscan
IPR010439 all species →	Domain	MUN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12166 all species →	CALCIUM-DEPENDENT SECRETION ACTIVATOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0016079 all species →	Biological Process	synaptic vesicle exocytosis	Interproscan
GO:1990504 all species →	Biological Process	dense core granule exocytosis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025821-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025821-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

48.0Max TPM

17.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.71	25.86
polyp at pH7 6	18	18	15.01	25.05
coral polyp · control treatment	16	16	22.59	47.95
coral polyp · oil and dispersant treatment	16	16	15.41	26.72
coral polyp · oil treatment	16	16	22.47	42.79
coral polyp · dispersant treatment	16	16	17.83	37.15
Polyp	10	9	8.50	15.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.13
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.49
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.19
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.37
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.91
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.48
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.13
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.06
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.99
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.58
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.24
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.64
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.17
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.49
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.05
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.31
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.12
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.06
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.52
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.48
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.38
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.05
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.38
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.13
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.78
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.30
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.29
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.37
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.29
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.81
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.98
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.79
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.33
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.76
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.72
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.34
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.28
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.33
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.77
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.28
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.72
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.76
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.15
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.20
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.10
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.39
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.35
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.50
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.02
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.99
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.37
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.50
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.54
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.79
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.75
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.86
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.98
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.57
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.95
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.56
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.45
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.68
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.88
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.98
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.20
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.68
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.45
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.11
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.93
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.33
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.63
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.71
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.31
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.33
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.77
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.53
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.22
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.09
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.88
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.