Gene detail

Detailed information of OS493_025825-T1 in Lophelia pertusa

Genomic Location: scaffold_129:1092715...1095158
NR annotation: KAJ7377930.1, Dynein regulatory complex protein 11 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86XH1	Dynein regulatory complex protein 11 OS=Homo sapiens OX=9606 GN=IQCA1 PE=1 SV=1
A6NCM1	IQ and AAA domain-containing protein 1-like OS=Homo sapiens OX=9606 GN=IQCA1L PE=1 SV=3
Q9CUL5	Dynein regulatory complex protein 11 OS=Mus musculus OX=10090 GN=Iqca1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005135 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_025825-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR052267 all species →	Family	Nexin-Dynein Regulatory Complex Component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14690 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_025825-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17411	MRPS33; small subunit ribosomal protein S33	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025825-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

231.1Max TPM

58.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	41.35	75.89
polyp at pH7 6	18	18	37.23	83.61
coral polyp · control treatment	16	16	78.12	149.22
coral polyp · oil and dispersant treatment	16	16	54.41	182.02
coral polyp · oil treatment	16	16	75.41	162.33
coral polyp · dispersant treatment	16	16	58.61	231.13
Polyp	10	10	77.37	160.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.89
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.81
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.21
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.75
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.14
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.29
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.74
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.67
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.54
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.97
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.27
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.94
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.04
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.75
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.61
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.41
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.08
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.51
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.25
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.23
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.37
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.58
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.49
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.33
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.57
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.87
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.14
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.01
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.53
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	149.22
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	143.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	108.86
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.79
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.51
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.97
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.42
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.33
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.58
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.69
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.89
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.80
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.82
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.45
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.45
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.47
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	182.02
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.93
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.67
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.77
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.74
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.04
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.61
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.51
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.49
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.66
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	162.33
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	95.05
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.06
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.20
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.81
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.22
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.97
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.08
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.17
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.93
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.41
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.08
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	231.13
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.07
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.56
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.40
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.47
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.19
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.75
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.58
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.46
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.93
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.18
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	160.99
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	108.11
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	97.85
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	77.73
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	66.82
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	58.07
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	53.37
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	52.90
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	52.37
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	45.46

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.