Gene detail

Detailed information of OS493_025826-T1 in Lophelia pertusa

Genomic Location: scaffold_129:1097383...1115287
NR annotation: KAJ7377931.1, Dynein regulatory complex protein 11 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86XH1	Dynein regulatory complex protein 11 OS=Homo sapiens OX=9606 GN=IQCA1 PE=1 SV=1
Q9CUL5	Dynein regulatory complex protein 11 OS=Mus musculus OX=10090 GN=Iqca1 PE=2 SV=2
Q6AXQ7	IQ and AAA domain-containing protein 1-like OS=Rattus norvegicus OX=10116 GN=Iqca1l PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005135 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR052267 all species →	Family	Nexin-Dynein Regulatory Complex Component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14690 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025826-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025826-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

102.8Max TPM

33.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	24.71	36.73
polyp at pH7 6	18	18	28.75	92.67
coral polyp · control treatment	16	16	45.25	102.80
coral polyp · oil and dispersant treatment	16	16	30.83	87.67
coral polyp · oil treatment	16	16	36.67	51.80
coral polyp · dispersant treatment	16	16	33.41	55.37
Polyp	10	10	39.67	84.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.73
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.06
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.97
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.88
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.99
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.78
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.55
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.86
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.07
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.12
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.58
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.22
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.67
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.05
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.53
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.23
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.22
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.13
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.89
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.15
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.21
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.86
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.32
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.80
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.46
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.51
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.64
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.67
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.17
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.92
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.40
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.23
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.67
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.97
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.40
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.37
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.52
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.44
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.69
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.94
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.89
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.88
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.64
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.92
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.69
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.80
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.97
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.64
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.92
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.71
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.16
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.74
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.50
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.54
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.66
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.04
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.31
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.37
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.41
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.19
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.79
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.45
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.63
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.59
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.23
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.67
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.43
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.90
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	84.36
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	41.98
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	41.70
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	36.47
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	35.80
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	34.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	32.96
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	31.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	29.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	27.79

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.